PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01970g06013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 331aa MW: 36117.4 Da PI: 7.3429

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01970g06013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	51.9	1.8e-16	25	78	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + Y eC +N ++ +DGC f p g g+++al+C CgC R+FHRr + Niben101Scf01970g06013.1 25 AIYGECIRNRLTGAMTYNIDGCLAFAPG-GPPGSTQALRCQTCGCSRSFHRRLDT 78 78***********************8.8889****************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.7E-15	26	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	16.506	27	76	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-8	27	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MANNNMLRAN SAARANNNRP VISAAIYGEC IRNRLTGAMT YNIDGCLAFA PGGPPGSTQA 60 LRCQTCGCSR SFHRRLDTNN LPPPAASRQI YDDARLVYSP PVFTAPSSTI IPPPPPPPHT 120 QPDAPAADVN MESSNVNANS LTESFRVTVV ENISTGSVNL QCVRSPVSAT RGSVKGKEVM 180 DAEIAKTFAS LPPLPPRRQG SKSPAMSGKR KSNISSSDVV SEIMKDKVWL LTEELEWLNM 240 KNKEEEDKNN NNKKQLEETT SNVSRREPIF DHTIERLMNN RAEVLKTMNH QFLVIATSLT 300 ARRELGDQSP CSTGTSNTEL ENDESSSDSD S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A314L9L8	0.0	A0A314L9L8_NICAT; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15336	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-11	homeobox protein 21