PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01970g06008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 143aa    MW: 15960.3 Da    PI: 8.7058
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01970g06008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer67.13.1e-211062457
               ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                              +rY eClkNh  + G + +DGC+Ef++s ge+gt+ +  Ca CgC R+FHR ++
  Niben101Scf01970g06008.1 10 IRYGECLKNHSKKHGHYLFDGCREFVKS-GEDGTKGSYICANCGCIRSFHRMNN 62
                              79*************************9.999*******************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-201062IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-111059IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-151160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.1061261IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MASNSSSTPI RYGECLKNHS KKHGHYLFDG CREFVKSGED GTKGSYICAN CGCIRSFHRM  60
NNQPLHRHQA IRLCFFHHCV IPNGIQPIFH PFMATAGKTQ VSVFTAFLPD EMGPVPVPLP  120
LFRETSSSGT FGILKGKQNM DME
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A314LBP52e-70A0A314LBP5_NICAT; Mini zinc finger protein 4
STRINGPGSC0003DMT4000868603e-31(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13748615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-16mini zinc finger 2