PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01956g12014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 17067.1 Da PI: 10.0156 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 26 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g +r +lg+f tae+Aa+a+++ + +l+g+ Niben101Scf01956g12014.1 26 KYRGVRRRP-WGKFAAEIRDPTRQG--ARQWLGTFETAEDAARAYDKTAFNLRGH 77 8********.**********96544..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.4E-31 | 26 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 26 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.44E-29 | 26 | 85 | No hit | No description |
PROSITE profile | PS51032 | 23.788 | 26 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-34 | 26 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 26 | 85 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.5E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MEGSSSKGKK VMQEKESGNK GKEEIKYRGV RRRPWGKFAA EIRDPTRQGA RQWLGTFETA 60 EDAARAYDKT AFNLRGHLAT LNFPNEYYSQ LSNPPYHYRT TSFNIINPIR RGLEKESSPI 120 GNQDKEIIEF EYLDDTRFVP TNAITSKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-28 | 21 | 136 | 9 | 113 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016495179.1 | 4e-91 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 1e-38 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1J6KW57 | 3e-92 | A0A1J6KW57_NICAT; Ethylene-responsive transcription factor erf098 | ||||
STRING | XP_009590142.1 | 2e-90 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 5e-41 | ERF family protein |
Publications ? help Back to Top | |||
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