PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01956g10015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 130aa    MW: 14793.5 Da    PI: 6.5392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01956g10015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-201567256
                       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr ++ +g+++AeIrd  +++    r++lg+f taeeAa+a+++a+ +++g+
  Niben101Scf01956g10015.1 15 KYRGVRKRP-WGKFAAEIRDtSRQG--GVRIWLGTFTTAEEAARAYDKAAYSMRGN 67
                              8********.**********44334..4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-211575IPR016177DNA-binding domain
SMARTSM003804.1E-321580IPR001471AP2/ERF domain
PROSITE profilePS5103223.1561574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-301576IPR001471AP2/ERF domain
CDDcd000182.71E-281575No hitNo description
PfamPF008471.1E-131566IPR001471AP2/ERF domain
PRINTSPR003671.9E-111627IPR001471AP2/ERF domain
PRINTSPR003671.9E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDERGKIKDN TEEVKYRGVR KRPWGKFAAE IRDTSRQGGV RIWLGTFTTA EEAARAYDKA  60
AYSMRGNLAI LNFPEEYNLP SSSSHFNTGS SSMASSSVQV RNEQVLELEY LDDKLLEELL  120
DCDQHANKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-3611301129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800610.15e-75PREDICTED: ethylene-responsive transcription factor ERF096-like
RefseqXP_016432386.15e-75PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3WY131e-73A0A1S3WY13_TOBAC; ethylene-responsive transcription factor ERF096-like
TrEMBLA0A1U7YP431e-73A0A1U7YP43_NICSY; ethylene-responsive transcription factor ERF096-like
STRINGXP_009800610.12e-74(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.15e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]