PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01956g05006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 284aa    MW: 31952.3 Da    PI: 4.8008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01956g05006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.7e-2192141255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++a+k+++g
  Niben101Scf01956g05006.1  92 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDEAAKRIRG 141
                               8********.**********94....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-2792141IPR001471AP2/ERF domain
PfamPF008475.0E-1592141IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-1992141IPR016177DNA-binding domain
PROSITE profilePS5103222.33992170IPR001471AP2/ERF domain
SMARTSM003803.2E-3092152IPR001471AP2/ERF domain
CDDcd000184.31E-3092142No hitNo description
PRINTSPR003677.0E-1293104IPR001471AP2/ERF domain
PRINTSPR003677.0E-12115131IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-7140170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-11142171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MCGGAIISDY EPVGNRCRKV SARDLWAELD PISDFWSSSS SSIAGKSDSV QSPTHSYNRP  60
QKSDTSKLNQ LEKGTSVDVE KETSDPRPRK NKYRGIRQRP WGKWAAEIRD PQKGVRVWLG  120
TFNTAEEAAR AYDEAAKRIR GTFNTAEEAA RAYDGTAKRI RGDKAKLNFP EPPSTPSPPA  180
KRQCTSTIPD KTTLLESSDL MSEKPASIML NYEYENQTPY YPMDMTAAED PQHHDYELNE  240
QISNLESFLD LDPDSSQFSG IVDSDPLNIF LMDDFAATQQ QLFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1993142353ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237585.11e-158PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLA0A1J6JX301e-156A0A1J6JX30_NICAT; Ethylene-responsive transcription factor rap2-3
STRINGXP_009597158.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-45ethylene-responsive element binding protein