PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01953g01012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 271aa MW: 31731.5 Da PI: 4.8933 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 73 | 123 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+ + ++ +++ ++Ak+lgL+ rqV +WFqN+Ra++k Niben101Scf01953g01012.1 73 RFTDEQVKLLESMFRLETKLEPRKKLQMAKELGLQPRQVAIWFQNKRARWK 123 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.4 | 1.7e-37 | 71 | 159 | 3 | 91 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +r+++eqvklLE++F+ e+kLep++K ++a+eLglqprqva+WFqn+RAR+k+kqlE++y +Lk+++d+l+ + ++L++e+e+L Niben101Scf01953g01012.1 71 GKRFTDEQVKLLESMFRLETKLEPRKKLQMAKELGLQPRQVAIWFQNKRARWKSKQLEHEYIVLKAKFDHLNMQFQSLKTEKERL 155 58*********************************************************************************99 PP HD-ZIP_I/II 88 reel 91 +l Niben101Scf01953g01012.1 156 LIQL 159 8665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.22E-17 | 59 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.714 | 65 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 67 | 129 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 72 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-15 | 73 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.10E-13 | 73 | 126 | No hit | No description |
PRINTS | PR00031 | 2.9E-5 | 96 | 105 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.9E-5 | 105 | 121 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-11 | 125 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
ILDQDTYTTS FKHIYSCPAN ITFSIYAVEY IIDKRTPFSD LLNKVMEPEE SQELEKSKSP 60 NSLKKKSTEN GKRFTDEQVK LLESMFRLET KLEPRKKLQM AKELGLQPRQ VAIWFQNKRA 120 RWKSKQLEHE YIVLKAKFDH LNMQFQSLKT EKERLLIQLG ILNDQLENNV ARGSRSEDLK 180 DNEMYTSSEN GGTDLELKDS PGCSNARFDH KRIKEDQDDD TAEEKDKYFT PKEEAEFWNL 240 EELGDNSLEQ WCVGLGSSFN QSCNNSELWD F |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232295.1 | 1e-155 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | A0A1J6KHK4 | 1e-154 | A0A1J6KHK4_NICAT; Homeobox-leucine zipper protein athb-7 | ||||
STRING | XP_009798092.1 | 1e-153 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-38 | homeobox 7 |