PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01950g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 315aa    MW: 34221.6 Da    PI: 7.3904
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01950g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP61.91.5e-192689278
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                              C v+gC+adls+++eyhrrhk+ +          s     fC    rfh+l efD++krsCr+rL++hn+rrrk+q+
  Niben101Scf01950g02001.1 26 CLVDGCNADLSQCREYHRRHKIQHL---------SRSDGSFC----RFHSLVEFDDGKRSCRKRLDGHNRRRRKPQP 89
                              *********************9543.........34456798....9***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.3E-102174IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.1872387IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-212492IPR004333Transcription factor, SBP-box
PfamPF031104.8E-102686IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESSSSSSSS SKRAKAPGNI AQVAHCLVDG CNADLSQCRE YHRRHKIQHL SRSDGSFCRF  60
HSLVEFDDGK RSCRKRLDGH NRRRRKPQPD SMARTSGLLF TGQQGTKLLS FSSQQIFPSA  120
AAWAGVVKTD SDMVLYNNQS HINCMDNQNS FPDSSACSYK GGNQFQFMQG SDHSLPEASI  180
CQPLVDHANS AAAAVSSSGQ KIFSSGLNEI VDSDRALSLL SSAPAVTREI GFSHMVQQPA  240
SIPRPQSQSV AHSLHYGGLS QYPFAQDFNS QPQDSAADSH VSNNSSLHFH DMLQNGPDGS  300
STSAGCEQTL AFMWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-1326861184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16986KRSCRKRLDGHNRRRRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764314.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_009764315.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_009764316.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_009764317.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A1U7VPP00.0A0A1U7VPP0_NICSY; squamosa promoter-binding-like protein 16
STRINGXP_009764314.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-32SBP family protein