PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01947g01005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 338aa MW: 38732.1 Da PI: 10.024 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.7 | 9e-16 | 47 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + ng r++lg+f +aeeAa a+++ ++ ++g Niben101Scf01947g01005.1 47 HYIGVRTRP-WGKYAAEIRDSTRNG--IRVWLGTFNSAEEAAMAYDQVALPMRG 97 799***999.**********44465..*********************998887 PP | |||||||
2 | AP2 | 49.7 | 9e-16 | 205 | 255 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + ng r++lg+f +aeeAa a+++ ++ ++g Niben101Scf01947g01005.1 205 HYIGVRTRP-WGKYAAEIRDSTRNG--IRVWLGTFNSAEEAAMAYDQVALPMRG 255 799***999.**********44465..*********************998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.62E-25 | 46 | 106 | No hit | No description |
PROSITE profile | PS51032 | 20.455 | 47 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-10 | 47 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-27 | 47 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 47 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.0E-31 | 47 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-8 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-8 | 71 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.62E-25 | 204 | 264 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-21 | 205 | 265 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-10 | 205 | 255 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-27 | 205 | 264 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.455 | 205 | 263 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-31 | 205 | 269 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MDLKIQDEKQ EVEVELSSLE NTSLSETSSK EKKNDFSPKR PQNAEKHYIG VRTRPWGKYA 60 AEIRDSTRNG IRVWLGTFNS AEEAAMAYDQ VALPMRGPST CLNFPVERVR KMLQETECNF 120 LKKGLSPAAA LKEKHKKRTT VSRKKGKRKQ VNKEDNIIWE LTYWMNSCLI EVELSSLENT 180 SLSETSSKEK KNDFSPKRPQ NAEKHYIGVR TRPWGKYAAE IRDSTRNGIR VWLGTFNSAE 240 EAAMAYDQVA LPMRGPSTCL NFPVERVRKM LQETECNFLK KGLSPAAALK EKHKKRTTVS 300 RKKGKRKQVN KEDNIVFIFE DLGTDLLDEL LSEYSSSN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-23 | 48 | 265 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 291 | 302 | KHKKRTTVSRKK |
2 | 300 | 307 | RKKGKRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato). {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Ethylene induction is completely dependent on functional ETHYLENE-INSENSITIVE2 (EIN2), ETHYLENE-INSENSITIVE3 (EIN3), which is itself a transcription factor and CORONATIVE-INSENSITIVE1 (COI1) proteins. Induction by jasmonate, B.cinerea or F.oxysporum as well as the synergistic induction by ethylene and jasmonate requires EIN2 and COI1. Induction by methyl jasmonate (MeJA) is independent of JAR1. Induction by salicylic acid (SA) is dependent on NPR1 but not on PAD4. Seems not to be induced by Alternaria brassicicola. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609581.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_016507098.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | Q8LDC8 | 2e-42 | ERF92_ARATH; Ethylene-responsive transcription factor 1B | ||||
TrEMBL | A0A1S4D1A2 | 1e-105 | A0A1S4D1A2_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009609581.1 | 1e-106 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23240.1 | 6e-39 | ethylene response factor 1 |