PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01942g08004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 435aa    MW: 47671 Da    PI: 6.8068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01942g08004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20205254255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Niben101Scf01942g08004.1 205 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 254
                               8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.08E-21204264No hitNo description
SuperFamilySSF541711.7E-22205263IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-33205263IPR001471AP2/ERF domain
PROSITE profilePS5103225.712205262IPR001471AP2/ERF domain
PfamPF008473.5E-14205254IPR001471AP2/ERF domain
SMARTSM003801.8E-36205268IPR001471AP2/ERF domain
PRINTSPR003671.2E-11206217IPR001471AP2/ERF domain
PRINTSPR003671.2E-11228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MCLLIKVANP GESGEHDRIP STGGDSESTT TTTTTTTEGG IPQPYEQSFE EMLRQQIQQE  60
TEYLMSSSAT PMFSGYSQSR EMSEMVTALT HVVSGRRQGE LTYRPEVTTS FGGGSPSSSS  120
SRSWAGQKRR RDQEESVAAE QVQRVYGGFS DSRGGESSSS VKPEEASRMV APPTTTSTIT  180
MTAAAQPTPQ PAEGGAEETG ERRKRYRGVR QRPWGKWAAE IRDPHKAARV WLGTFDTAEA  240
AARAYDEAAL RFRGNRAKLN FPENARLLPQ QQQQSQPTTR SAISSSSATS QFPLMAAATT  300
PSPFFQTYQP QQQQQQPFQS AEMVRDYWEY SQLLQNPGDF HAQQSSSSLL EQMLFASSSM  360
GLLHSHTFPS YSSSSALATS SSASSPAYPL FYSAQQSRFF QPPPQSSHQN QTSSSTSSSH  420
APFWTSSTHY PPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22204262160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258503.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1
TrEMBLA0A314LIT00.0A0A314LIT0_NICAT; Ethylene-responsive transcription factor abr1
STRINGXP_009777816.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-20related to AP2 6