PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01938g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 340aa    MW: 38865.6 Da    PI: 8.7347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01938g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.8e-1461106147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg W + Ed +l ++v+q+G+ +W++ a+++  gR++k+c++rw++ 
  Niben101Scf01938g05001.1  61 RGHWRPHEDAKLRELVAQFGPQNWNLSAEKLE-GRSGKSCRLRWFNQ 106
                               899*****************************.***********996 PP
2Myb_DNA-binding51.23e-16113156146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r ++++eE+e+l+ a k++G++ W+ Iar ++ gRt++ +k++w+ 
  Niben101Scf01938g05001.1 113 RRAFSEEEEERLLIAQKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 156
                               678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.04556107IPR017930Myb domain
SMARTSM007172.1E-1060109IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-2561158IPR009057Homeodomain-like
PfamPF002491.6E-1261106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2462114IPR009057Homeodomain-like
CDDcd001679.22E-1064105No hitNo description
PROSITE profilePS5129426.353108162IPR017930Myb domain
SMARTSM007179.9E-13112160IPR001005SANT/Myb domain
PfamPF002491.2E-12113155IPR001005SANT/Myb domain
CDDcd001671.80E-9115155No hitNo description
Gene3DG3DSA:1.10.10.603.3E-19115161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNSTAVSCAV EEMNFLLPSV KESHWLFNQM EEERGTNKLK DEKEVVDLVG MRNSNTKLRA  60
RGHWRPHEDA KLRELVAQFG PQNWNLSAEK LEGRSGKSCR LRWFNQLDPR INRRAFSEEE  120
EERLLIAQKM YGNKWSMIAR LFPGRTDNAV KNHWHVIMAR KHREQNSVYR RRKPSNLQQI  180
NFPHIVSASN LNSDSTISSN NNNNNIDHQS ASSCTDLSLT PSSEVIIPPF LMSRFTPMHH  240
HHHQEILQSN KGVSRHEELK MESGVHPKFL YGKEEPTAKN VEEGSQCGCG NQSDTNSEIS  300
ASESVANNMA SVNIYQNGKQ EKQMKSKTMH FIDFLGVGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-28611614104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-28611614104C-Myb DNA-Binding Domain
1msf_C2e-28611614104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489787.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A1S4BLS50.0A0A1S4BLS5_TOBAC; transcription factor LAF1-like
STRINGXP_009587330.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-68myb domain protein 105