PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01927g08005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 264aa    MW: 29768.3 Da    PI: 5.1267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01927g08005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd  l+++ ++ G+g +W + +++ g++R++k+c++rw++yl
  Niben101Scf01927g08005.1 14 RGPWSPEEDNTLKNYLEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                              89*********************************************97 PP
2Myb_DNA-binding475.8e-1569111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +T+eEd +++ + +q G++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf01927g08005.1  69 GGFTEEEDNIILSLYRQIGSR-WSVIAANLQ-GRTDNDVKNHWNT 111
                               569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.969962IPR017930Myb domain
SuperFamilySSF466896.39E-2712109IPR009057Homeodomain-like
SMARTSM007177.8E-111364IPR001005SANT/Myb domain
PfamPF002499.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001674.40E-81662No hitNo description
PROSITE profilePS5129423.24663117IPR017930Myb domain
SMARTSM007173.3E-1367115IPR001005SANT/Myb domain
PfamPF002492.3E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2470117IPR009057Homeodomain-like
CDDcd001671.28E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDNTLKNYLE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIL SLYRQIGSRW SVIAANLQGR TDNDVKNHWN TKLKKKLLAA  120
VNYTNLSSCS YNSSDLNHNF SINSFSRNYS TTDSNTFTSL MDPNLTNPNL LVPEILVAES  180
DQLFPIPSLM EIQENGAIQL AQDQEDGYIM DLISSGISSS YYYDLINGFD LQEKFIGADD  240
PNFSTLVQLQ ANNISDIDQT FKGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474887.11e-171PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S4ADY41e-169A0A1S4ADY4_TOBAC; transcription factor RAX2-like
STRINGXP_009799606.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-74MYB family protein