PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01926g01007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 547aa MW: 60398.2 Da PI: 5.5534

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01926g01007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.5	1.3e-14	2	39	19	56
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Niben101Scf01926g01007.1 2 FKNCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 39 9**********************************998 PP
2	START	88.7	1.2e-28	102	247	2	128
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 la +a++e++++ + +ep+W s+ + +n++e+++ f+ + + +++ea++++++v+ ++ +lve+l+d + +W+ ++ Niben101Scf01926g01007.1 102 LAVAAMEEFIQMPQMGEPLWLPSVdrrtSFLNEEEYVRLFPIGIGpkiagFKTEASKDTAAVFLNPINLVEILVDAN-KWSSMFS 185 6789******************999999********999****************************.*** PP ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEE CS START 78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdv 128 a t++v+s+g galq+++ae+q++ p vp Rd +fvRy++++ +g w++vdv Niben101Scf01926g01007.1 186 sivsTAVTVDVLSTGvagnfnGALQVIFAEFQVPFPQVPtRDCYFVRYCKRSVDGIWAVVDV 247 999999****************************************************96 PP
3	START	31.1	5.4e-11	247	289	164	206
EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtw+ehv+ ++ + +++++l++sgla+gak+w +tl+rqce+ Niben101Scf01926g01007.1 247 VTWMEHVEADDTAIYNIYKPLLNSGLAFGAKRWISTLDRQCER 289 8****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	7.87E-13	1	39	No hit	No description
Pfam	PF00046	3.8E-12	1	39	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.25E-11	1	42	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	1	41	IPR001356	Homeobox domain
SMART	SM00389	7.3E-4	1	45	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.7E-13	2	39	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	16	39	IPR017970	Homeobox, conserved site
SuperFamily	SSF55961	5.91E-17	92	290	No hit	No description
PROSITE profile	PS50848	20.07	92	248	IPR002913	START domain
CDD	cd08875	1.14E-87	96	288	No hit	No description
SMART	SM00234	1.2E-21	101	289	IPR002913	START domain
Pfam	PF01852	1.0E-20	102	247	IPR002913	START domain
PROSITE profile	PS50848	10.098	249	292	IPR002913	START domain
SuperFamily	SSF55961	1.65E-19	311	492	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
FFKNCPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKV DRISAFAAKY MGEPVSSLNV 60 YSPSVTPPSS LDLGNAFGNK GEVIRSSFNG PTEAEKPFII DLAVAAMEEF IQMPQMGEPL 120 WLPSVDRRTS FLNEEEYVRL FPIGIGPKIA GFKTEASKDT AAVFLNPINL VEILVDANKW 180 SSMFSSIVST AVTVDVLSTG VAGNFNGALQ VIFAEFQVPF PQVPTRDCYF VRYCKRSVDG 240 IWAVVDVTWM EHVEADDTAI YNIYKPLLNS GLAFGAKRWI STLDRQCERL ARAMATNFPD 300 DDMTNMVLGG PEGRRSVLKL AERMVISYCS GVSATSAHQW TTLSGSGSEN DVRIMFRKSI 360 NNPGRPPGIV MCAATSFWLP FSSKTVFDFL RDENTRTEWD ILSNGGVIQR LVHIANGRET 420 GNAVSILRVN SSAISSQNNM LILQESSTDP TGSFVVYAPV DVPAMNTVIN GGNPEYVSLL 480 PSGFAILPDG PPGRIAGGSF SLLHFRFWLI LFLPLSFPLD QLLLSTNSLL AQLIRSGLLF 540 YPIPLDA

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

FFKNCPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKV DRISAFAAKY MGEPVSSLNV  60
YSPSVTPPSS LDLGNAFGNK GEVIRSSFNG PTEAEKPFII DLAVAAMEEF IQMPQMGEPL  120
WLPSVDRRTS FLNEEEYVRL FPIGIGPKIA GFKTEASKDT AAVFLNPINL VEILVDANKW  180
SSMFSSIVST AVTVDVLSTG VAGNFNGALQ VIFAEFQVPF PQVPTRDCYF VRYCKRSVDG  240
IWAVVDVTWM EHVEADDTAI YNIYKPLLNS GLAFGAKRWI STLDRQCERL ARAMATNFPD  300
DDMTNMVLGG PEGRRSVLKL AERMVISYCS GVSATSAHQW TTLSGSGSEN DVRIMFRKSI  360
NNPGRPPGIV MCAATSFWLP FSSKTVFDFL RDENTRTEWD ILSNGGVIQR LVHIANGRET  420
GNAVSILRVN SSAISSQNNM LILQESSTDP TGSFVVYAPV DVPAMNTVIN GGNPEYVSLL  480
PSGFAILPDG PPGRIAGGSF SLLHFRFWLI LFLPLSFPLD QLLLSTNSLL AQLIRSGLLF  540
YPIPLDA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802525.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2
Refseq	XP_009802527.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X4
Refseq	XP_016467380.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A1S3ZSJ6	0.0	A0A1S3ZSJ6_TOBAC; homeobox-leucine zipper protein HDG2-like
TrEMBL	A0A1U7YEI6	0.0	A0A1U7YEI6_NICSY; homeobox-leucine zipper protein HDG2-like isoform X4
TrEMBL	A0A1U7YUS0	0.0	A0A1U7YUS0_NICSY; homeobox-leucine zipper protein HDG2-like isoform X2
STRING	XP_009802524.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]