PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01908g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 352aa    MW: 39315.8 Da    PI: 6.8779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01908g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Niben101Scf01908g01004.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCNKSCRLRWTNYL 61
                              79******************************99************97 PP
2Myb_DNA-binding49.41e-1567112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Niben101Scf01908g01004.1  67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.748965IPR017930Myb domain
SuperFamilySSF466891.04E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002498.5E-161461IPR001005SANT/Myb domain
CDDcd001671.80E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2465117IPR009057Homeodomain-like
SMARTSM007178.0E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.02266116IPR017930Myb domain
PfamPF002492.7E-1467112IPR001005SANT/Myb domain
CDDcd001676.26E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCN KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLQKKLKKIQ  120
GHDQKEKSSL SSSSSSQLIS KGQWERRLQT DIHTAKQALS AALSLNKKTT DFSPNITPST  180
NSFPVQTSTN TYASSADNIS RLLQSWMKKS PKSSQSISNN STTSQSSFNN LSIGTGSSSS  240
PSEGTMNAPT PEGLDSLFSF NSSYNSDVSQ SMSADEVVAF TPENAEIFQV ESNTHNLPNF  300
KDENGFLFQE GISKQNLETV VPLTLLENWL FDDSNVQTQE ELMEIGIGME WL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793068.10.0PREDICTED: myb-related protein 306-like isoform X1
RefseqXP_009793069.10.0PREDICTED: myb-related protein 306-like isoform X2
RefseqXP_016452053.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-120MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S3YJ310.0A0A1S3YJ31_TOBAC; myb-related protein 306-like
TrEMBLA0A1U7XQB00.0A0A1U7XQB0_NICSY; myb-related protein 306-like isoform X1
STRINGXP_009793069.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-103myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]