PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01887g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 260aa    MW: 28963.3 Da    PI: 8.7918
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01887g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-194085147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
  Niben101Scf01887g01001.1 40 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 85
                              79*****************************9.***********985 PP
2Myb_DNA-binding53.74.8e-1794136347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Niben101Scf01887g01001.1  94 PFSQTEDDTILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 136
                               79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8163590IPR017930Myb domain
SuperFamilySSF466892.12E-3138133IPR009057Homeodomain-like
SMARTSM007171.1E-163988IPR001005SANT/Myb domain
PfamPF002492.5E-184085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-254193IPR009057Homeodomain-like
CDDcd001679.92E-164284No hitNo description
SMARTSM007176.4E-1591139IPR001005SANT/Myb domain
PROSITE profilePS5129420.94691141IPR017930Myb domain
CDDcd001679.18E-1294137No hitNo description
PfamPF002492.7E-1494136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2394140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEFLNRCSTS TTTSSCESSS SESSLSGKTP RDGKKSERIK GPWSAEEDKI LTKLVERYGA  60
RNWSLISKYI KGRSGKSCRL RWCNQLSPNV QHRPFSQTED DTILAAHAKY GNRWATIARL  120
LPGRTDNAVK NHWNSTLKRR YQQLLQQQQH NQSSVVFSDV KINESTSGSG PCMDYMNAND  180
SPIRGNFPIN NVVTTNCSSE FDDPMTTLSL APPGMGGDEL PEKKTESFPA GFWDVMRDVI  240
AKEVREYVAS SFSGASTGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-41371401104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237788.11e-167PREDICTED: transcription factor MYB44-like
TrEMBLA0A1J6KH951e-165A0A1J6KH95_NICAT; Transcription factor myb44
STRINGXP_009780273.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-56myb domain protein 73