PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01879g02007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 375aa MW: 41831.1 Da PI: 9.0026

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01879g02007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.2e-32	189	242	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Niben101Scf01879g02007.1 189 PRMRWTSTLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 242 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.4E-15	186	243	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-28	187	243	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-24	189	243	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-7	190	241	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MELFPAQPDL SLRISPPNNK PSSSSSSSWK RSTSNSTNED QEMDLGFWKR ALESRNSSNN 60 NNNNINNSSC FELSLSSNIN PKPNSSQYFH HLQNTNTNFI HSLHQNQVLN PIKGVPVYNQ 120 NPIFPYDNIN ATTTLPIPSS VSSFNHNHTI SSSNSHSHSH FQSHHYHQNG LMRSRIISRF 180 QAKRSMRAPR MRWTSTLHAR FIHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY 240 RTMKTTDKAA AGAASSGQSE VFDHGSSGDN NSEELVLDVQ NSGKSELSIQ QGGRQEKDNY 300 RGLWSNSSRE SWQLHGNKKG DYPGNISSLE QKDNMDAKCL SNEGISTEVS SSTITEASPK 360 KPNLEFTLGI MPTIS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MELFPAQPDL SLRISPPNNK PSSSSSSSWK RSTSNSTNED QEMDLGFWKR ALESRNSSNN  60
NNNNINNSSC FELSLSSNIN PKPNSSQYFH HLQNTNTNFI HSLHQNQVLN PIKGVPVYNQ  120
NPIFPYDNIN ATTTLPIPSS VSSFNHNHTI SSSNSHSHSH FQSHHYHQNG LMRSRIISRF  180
QAKRSMRAPR MRWTSTLHAR FIHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY  240
RTMKTTDKAA AGAASSGQSE VFDHGSSGDN NSEELVLDVQ NSGKSELSIQ QGGRQEKDNY  300
RGLWSNSSRE SWQLHGNKKG DYPGNISSLE QKDNMDAKCL SNEGISTEVS SSTITEASPK  360
KPNLEFTLGI MPTIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	190	244	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	190	244	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	190	244	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	190	244	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	190	244	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	190	244	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	190	244	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	190	244	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800760.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	8e-85	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A1U7YPJ5	0.0	A0A1U7YPJ5_NICSY; probable transcription factor KAN2 isoform X1
STRING	XP_009800760.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-58	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]