PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01863g07004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 602aa    MW: 65017 Da    PI: 9.1647
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01863g07004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789.4e-25229273145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Niben101Scf01863g07004.1 229 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKPVEG 273
                               79****************************************985 PP
2QLQ60.54.7e-21160196137
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               ++FT++Q+++L++Q+l+yK+L+an PvP++Ll +++k
  Niben101Scf01863g07004.1 160 GPFTPSQWMELEHQALIYKHLVANIPVPHQLLIPLKK 196
                               59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.2E-13160196IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.9E-15161194IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.347161196IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954229273IPR014977WRC domain
PfamPF088793.1E-21230272IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MMKLIGGHLK SKEQQMMTTL PFVSRCXSNG SGQQLKQERS GASDDTNWRP SKVQRAAADD  60
YSALCKQMTQ QQGPTTPTLF MRSGSPNNGR GHSTMLSFSS PKSDELIPFL STNNASVQNS  120
SKSLAFPLFD SGSHYSRASA YASGGSNEST HGPFVARFRG PFTPSQWMEL EHQALIYKHL  180
VANIPVPHQL LIPLKKSLYP YAFSGLSSGS YASNWGWGTF HLGFTGNTDP EPGRCRRTDG  240
KKWRCSREAV PDQKYCERHI NRGRHRSRKP VEGQNGHAVS GSTTSKVASV APSSSATVIS  300
SSGTSNSLGA VQHQFNSLQP SAANPSTEQL FSRMQDHKGV SMISPTIGLK PKDSAISIQK  360
QHNGFELSSL SEFGLVSSDS LLNPSQRSSF VNPKSSNAFI DFNDQEQREQ HPVHHFIDGW  420
TKEQSSRASA SWPDELKSDW TQLSMSIPMA ASDFSSSSNS PRQEKLALSP LRLSRDFDPI  480
QMGLGVTNSH GEPMQKTANW LPVSWENALG GPLGEVLNST AGNAGDAKNS SALNLATEMW  540
DNSPPFGSSP TGVLQKSTFV SLSNSSSGGS PRADSKKVHE GAGMCDEVVG STLASSLCIP  600
SM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262892.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A314L7880.0A0A314L788_NICAT; Growth-regulating factor 1
STRINGXP_009589483.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-113growth-regulating factor 1