PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01830g01022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 468aa    MW: 51457.8 Da    PI: 7.1909
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01830g01022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.32.7e-23164207144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               d+ep+rC+RtDGKkWRC r+v +++k+CErH h+++ rsrk++e
  Niben101Scf01830g01022.1 164 DPEPWRCKRTDGKKWRCTRDVAPDQKYCERHAHKSKPRSRKPVE 207
                               79***************************************987 PP
2QLQ36.41.6e-13105140237
                       QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               +FTa+Qlq++ +Q  + Ky++a++PvPp+Ll+++++
  Niben101Scf01830g01022.1 105 PFTASQLQEFQRQTIICKYIMASAPVPPQLLLPLSN 140
                               9********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-4104140IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.788105140IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.3E-10105138IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.489164208IPR014977WRC domain
PfamPF088791.1E-18165207IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGNGENTELL DLKMKTTESS PSSYPYKKTM FMSPSSHPHF TAFDKESSRN STCLADDGGS  60
SGGDGGGPGD FVGRDSYVAA ALSSRPLQPF SCSTRGSMFL SGKAPFTASQ LQEFQRQTII  120
CKYIMASAPV PPQLLLPLSN NPTSAHLPQS NTSGLDLKFS RGSDPEPWRC KRTDGKKWRC  180
TRDVAPDQKY CERHAHKSKP RSRKPVEIHN TNNNSNNRHP PTTTRNHHHS FQFPTVQLSD  240
QTRSIEWLGR GDRGATIPII SCNQQNLQQL MQSSSGMGFN NDHTDLNRRN TPTFQMQDEA  300
KLYPMNNFNQ YISNRSNGMT LESSPLKNEE CGDSVIASLQ GRTTRDFIDA WSKDGLNDGI  360
SNNGSFTSLT LSMSGWNHGM DEDNEHAQVS INRMLDSEKS SDEVLRSQWL SPVSWMSSTA  420
PGGPLGEALC LGNATNLPSP HGYSNSTANS SCSFYSCENG SHGLDFIG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444360.10.0PREDICTED: growth-regulating factor 8-like
RefseqXP_019230191.10.0PREDICTED: growth-regulating factor 5-like
TrEMBLA0A1S3XWV80.0A0A1S3XWV8_TOBAC; growth-regulating factor 8-like
TrEMBLA0A314KK560.0A0A314KK56_NICAT; Growth-regulating factor 3
STRINGXP_009625634.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-27growth-regulating factor 8