PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01818g07006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 309aa    MW: 34717.7 Da    PI: 5.3265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01818g07006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-194292155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a++++++
  Niben101Scf01818g07006.1 42 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAAVAYDRAARSMRN 92
                              6899******.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-124292IPR001471AP2/ERF domain
CDDcd000181.79E-2642104No hitNo description
SuperFamilySSF541712.22E-184395IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-2643104IPR001471AP2/ERF domain
SMARTSM003807.7E-2843111IPR001471AP2/ERF domain
PROSITE profilePS5103220.0243105IPR001471AP2/ERF domain
PRINTSPR003671.8E-84455IPR001471AP2/ERF domain
PRINTSPR003671.8E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNIIKSSTSS TNKSTKPRKN IGSNVCSTQN GKQNAEEQHN NCRYLGVRRR PWGRYAAEIR  60
DPNTKERHWL GTFDTAEEAA VAYDRAARSM RNNNKSNKPT RTNFVYSDMP PGSSVTCMIS  120
PDEEYHHHHH LQQQQQQQLL VFSQVENVSV PAVDYTDFSQ FSISSTNNGG DSGGGEFALQ  180
QYYNPNYNVH MEESYSGKCY YFSEESNNQG AQFPAISSVS EHMGYSSSNS TSLLNEMIMP  240
RSFGTNNEYQ YGMTCGELGG GSTITTTSCT TTESYNGFGF DDCLQPLQYC SSNIMQDESN  300
NTTLDYWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1744103667ATERF1
3gcc_A1e-1744103667ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242459.11e-160PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1J6IY261e-158A0A1J6IY26_NICAT; Ethylene-responsive transcription factor lep
STRINGXP_009773564.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-29ERF family protein