PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01802g02017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 352aa MW: 38683.2 Da PI: 6.13 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.4 | 4.1e-16 | 141 | 187 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Niben101Scf01802g02017.1 141 VHNLSERRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 187 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-20 | 134 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-20 | 135 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.07 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.25E-14 | 140 | 182 | No hit | No description |
Pfam | PF00010 | 1.3E-13 | 141 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-18 | 143 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MANNNIYHRT ATTFSLTEPG PEPDDISVFL RQILHPSSNF KTHEMQYSSS LPHLLPKNHY 60 GELSSVLNSS VGGIFSSPYG AYNVPASVAN VSSSSVGTMD NDPDEYECES EVGAEDLGVE 120 ASAQPPPPSN TNPKRGRAAE VHNLSERRRR SRINEKMKAL QNLIPNSNKT DKASMLDEAI 180 EYLKQLQLQL QMLTMRNGPS MYPLGLPRVL QQNQVSQLSM GLCGGNGYTN AKAAGALHVN 240 QDTSLNAIFS PSGNRIETKL TPVATMSNVN HSNNAFESES SINVHLDPFQ LSRTTSKGFL 300 REDWLPLHEM NERPSKTVAI GENLASSAPF DASDLKRNTL EACLLRYDHL EL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607890.1 | 0.0 | PREDICTED: transcription factor SPATULA | ||||
Refseq | XP_016487135.1 | 0.0 | PREDICTED: transcription factor SPATULA-like | ||||
TrEMBL | A0A1S4BDY0 | 0.0 | A0A1S4BDY0_TOBAC; transcription factor SPATULA-like | ||||
STRING | XP_009607890.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9850 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 5e-32 | bHLH family protein |