PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01795g06002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 19541.4 Da PI: 6.1254 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 36 | 85 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f+taeeAa a+++a+ +l+g Niben101Scf01795g06002.1 36 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEEAALAYDQAAFALHG 85 9*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.48E-33 | 34 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 35 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-14 | 35 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-24 | 35 | 95 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.42 | 35 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-37 | 35 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MLLLNVLSEV GENSSNNLHA NKQEMTHLKE NEGANYRGVR RRPWGKYAAE IRDSTRNGVR 60 VWLGTFDTAE EAALAYDQAA FALHGTMAVL NFPVDIVYQS LMEMECGFKE GCSPVLILKK 120 MHSMKKGKSN MNRKKKEKEM NFENVLVLED LGADYLEEIL RLSEGCCDPS MSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-29 | 32 | 93 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 137 | RKKKEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016463526.1 | 1e-116 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 1e-57 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S3ZGV7 | 1e-114 | A0A1S3ZGV7_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009764919.1 | 1e-114 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-35 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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