PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01774g10021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 647aa MW: 71234.8 Da PI: 7.5577 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2e-12 | 307 | 363 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Niben101Scf01774g10021.1 307 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 363 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 45.3 | 2.2e-14 | 408 | 457 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Niben101Scf01774g10021.1 408 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 457 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.01E-19 | 307 | 371 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-14 | 307 | 373 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-9 | 307 | 363 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.359 | 308 | 371 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-12 | 308 | 372 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-22 | 308 | 377 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 309 | 320 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 406 | 467 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.55E-25 | 406 | 467 | No hit | No description |
PROSITE profile | PS51032 | 19.282 | 407 | 465 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-18 | 407 | 465 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-34 | 407 | 471 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 408 | 457 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 447 | 467 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 647 aa Download sequence Send to blast |
MKMKSMNDDN NNWSSHRSSN NTNSNSHNDA SSNWLGFSLS PHMKMEVTSS EPQHQHHQFN 60 NQSSALAQSF YLSSSPMNVT SNTSALSYGV GENNPFGHSS LSVMPLKSDG SLCIMEALSR 120 SHADAMVQSS SSPKLEDFLG GASQYGNHER EAMALSLDSL YYHQNEGYYS PMHCHGMYQE 180 SLLDEPKPTQ ISHCDAQMTT ASGNELKSWG HYAIDQHING TCSTMVGAGG GGGTCGSGGG 240 TFGGNDLQSL SLSMNPGSQS SCVTPRQISP NELECVAIET KKRAFGKVVQ KQPVHRKSID 300 TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QGGYDMEEKA ARAYDLAALK 360 YWGPSTHINF PLENYQKELE DMKNMTRQEY VAHLRRKSSG FSRGASMYRG VTRHHQHGRW 420 QARIGRVAGN KDLYLGTFST QEEAAEAYDV AAIKFRGVNA VTNFDISRYD VEKIMASNTL 480 PAGELARRNK EREPIESIEY NTNGHKNEEA CIQNVNNNNG NDVTDWKMVS YQSSNPSLGN 540 YRNPSFSMAL QDLIGIDLMN SSNHAILDDQ QNKIGNHFSN ASSLVTSLGS SREASPDKSA 600 ASLVFTKPTK FAVPSTNVNA CIPSAQLRPI PVSISHLPVF AAALNDA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019239081.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-152 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1J6KQ50 | 0.0 | A0A1J6KQ50_NICAT; Ap2-like ethylene-responsive transcription factor ant | ||||
STRING | XP_009610222.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-153 | AP2 family protein |