PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01774g07007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 599aa    MW: 64551.5 Da    PI: 8.5348
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01774g07007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-24222266145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Niben101Scf01774g07007.1 222 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 266
                               79****************************************985 PP
2QLQ61.81.9e-21154190137
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k
  Niben101Scf01774g07007.1 154 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 190
                               59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-12154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.516155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.1E-16155189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663222266IPR014977WRC domain
PfamPF088797.1E-21223265IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDFGVVGSLD NGGVICSDNT SSNMFTAAAA SVETKQKWYG STGFHKNQRF STTNTATEDD  60
WNNKDTKLAK TSDDFSSSKS AAAAAATMLF QQQLRSNCPN SQQMLSFSSS NSQNVTMPFH  120
HYTSTPFTRN SSGCGSGAMN AGNMHGVIAA GVKGPFTPSQ WMELEHQALI YKYITANVPI  180
PPYLLNPIRK ALESAGFATF AGLRPNVLGW GAFHLGFSNS NDPEPGRCRR TDGKKWRCSR  240
DAVADQKYCE RHMNRGRHRS RKPVEGQTGA TSAKLMNVSS SASASAALAP GSAASNTLAL  300
SHPQLSNLPP AVTNPSTTSP YLERNYTPKE NFGERYSDTK GLTVVSSSEK QSQHSIQKEQ  360
NLYGVTSRAE FGLVCADSLI NPLNKNSSLV NCRGYGNSEG KSQHHPLRQF MDDWPKNQSD  420
QSTVSWPDID LQSDRTQLSI SIPVITSDFM SSTSSPANDK LTTSPQYRLS QEHETTTQMG  480
LGIDIIISEP NQRQGNWIPI TWETSMGGPL GEVLHSTNNS SGDCKNKTAA LNLMTEGWDR  540
SPRMGSSPTG VLQKSSFGSL SNSSAGSSPR AGNSKTNEGS SLCNGLLGTT LVNPTLPAM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238627.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1J6JWU00.0A0A1J6JWU0_NICAT; Growth-regulating factor 6
STRINGXP_009626682.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-91growth-regulating factor 1