PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01773g04003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 983aa MW: 109357 Da PI: 6.4216

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01773g04003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9e-41	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ Niben101Scf01773g04003.1 143 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 220 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.3E-33	138	205	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.086	141	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.85E-38	142	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.6E-30	144	217	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.6E-5	752	870	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.66E-7	755	869	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.00E-6	759	869	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MEASVGKRYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV 60 ETGNLVASSN SSSSCSEETN HGIDQQRREL EKRRRVIVVD ENDSGGTLSL KLGGQAEPVA 120 EKRTKLAAAA ALPAPVTGTT RAVCQVDDCG TDLSKAKDYH RRHKVCEMHS KASRALVGNV 180 MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTQS ESVANNNSSN DGQATASGTN 240 QTEDQDLLAH LLRSIAGQGS LNGDKSLSGL LQESSNLLNN RSILRNPELA SMISNCSQAP 300 PRAKEHQFTN SAAEMPEKRL DAHDVRLEDG RTASSQSPGI LFPPVQSNSQ AYAQGRGNTT 360 GRSKLIDFDL NDVYVDSDDN IEDIDRSPVQ CPSWLQQDSH QSSPPQTSGN SDSASAQSPS 420 SSSGDTQTRT DRIVFKLFGK DPGDFPFVVR AQILDWLSHS PTEIESYIRP GCVVLTVYLR 480 LPESAWEELC YDLNSSLSRL LDVHGDDNFW TKGWIYISVQ NQIAFVCDGQ VILDMSLPSG 540 SNEHSTILSV RPIAVPVSGR AQFLVKGYNL SKPSTRLLCA LESNYLVPEA NNEVEKHVDG 600 IDKDDKLQSL NFTCSVPAVT GRGFIEVEDH GLSNSFFPFI VAEEDVCSEI RMLESELDLT 660 SANYVKGQIN NMEARNQAMD FIHELGWLLH RNNLKARLEH FGPDPVLYPL KRFKWLIDFC 720 VDHEWCAVVK KLLSVLLDGT VGAGDSTSLK FALTEMGLLH RAVRRNSRPL VELLLTYTPE 780 KVADELTLEY QSLVEIHGEF LFRPDCVGPA GLTPLHVAAG IDGSEDVLDA LTDDPRKVAI 840 EAWKNTRDST GFTPEDYARL RGHYSYIHLV QRKISKKATS GHIVVDIPIV PSIENSNQKE 900 ELATNSLEIS MTERRPISRP CGLCHKKLAY GSRSRSLLYR PAMFSMVAMA AVCVCVALLF 960 RGSPEVLYIF RPFRWEMVDF GTS

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MEASVGKRYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV  60
ETGNLVASSN SSSSCSEETN HGIDQQRREL EKRRRVIVVD ENDSGGTLSL KLGGQAEPVA  120
EKRTKLAAAA ALPAPVTGTT RAVCQVDDCG TDLSKAKDYH RRHKVCEMHS KASRALVGNV  180
MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTQS ESVANNNSSN DGQATASGTN  240
QTEDQDLLAH LLRSIAGQGS LNGDKSLSGL LQESSNLLNN RSILRNPELA SMISNCSQAP  300
PRAKEHQFTN SAAEMPEKRL DAHDVRLEDG RTASSQSPGI LFPPVQSNSQ AYAQGRGNTT  360
GRSKLIDFDL NDVYVDSDDN IEDIDRSPVQ CPSWLQQDSH QSSPPQTSGN SDSASAQSPS  420
SSSGDTQTRT DRIVFKLFGK DPGDFPFVVR AQILDWLSHS PTEIESYIRP GCVVLTVYLR  480
LPESAWEELC YDLNSSLSRL LDVHGDDNFW TKGWIYISVQ NQIAFVCDGQ VILDMSLPSG  540
SNEHSTILSV RPIAVPVSGR AQFLVKGYNL SKPSTRLLCA LESNYLVPEA NNEVEKHVDG  600
IDKDDKLQSL NFTCSVPAVT GRGFIEVEDH GLSNSFFPFI VAEEDVCSEI RMLESELDLT  660
SANYVKGQIN NMEARNQAMD FIHELGWLLH RNNLKARLEH FGPDPVLYPL KRFKWLIDFC  720
VDHEWCAVVK KLLSVLLDGT VGAGDSTSLK FALTEMGLLH RAVRRNSRPL VELLLTYTPE  780
KVADELTLEY QSLVEIHGEF LFRPDCVGPA GLTPLHVAAG IDGSEDVLDA LTDDPRKVAI  840
EAWKNTRDST GFTPEDYARL RGHYSYIHLV QRKISKKATS GHIVVDIPIV PSIENSNQKE  900
ELATNSLEIS MTERRPISRP CGLCHKKLAY GSRSRSLLYR PAMFSMVAMA AVCVCVALLF  960
RGSPEVLYIF RPFRWEMVDF GTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-31	143	217	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019247614.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1J6IP33	0.0	A0A1J6IP33_NICAT; Squamosa promoter-binding-like protein 1
STRING	XP_009796558.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]