PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01746g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 315aa    MW: 35982.6 Da    PI: 8.7898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01746g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-081445132
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                              +g+WT +Ede+l + ++++G g+W++ ++  g
  Niben101Scf01746g03003.1 14 KGPWTSQEDEKLTNFINKYGHGSWRALPKLAG 45
                              79************************999887 PP
2Myb_DNA-binding53.55.5e-174589248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              g++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf01746g03003.1 45 GKFSQEEEQTILNLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 89
                              79*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-10543IPR009057Homeodomain-like
SuperFamilySSF466892.28E-201185IPR009057Homeodomain-like
SMARTSM007171.4E-151391IPR001005SANT/Myb domain
PROSITE profilePS5129420.7913993IPR017930Myb domain
PfamPF002497.9E-164589IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-234590IPR009057Homeodomain-like
CDDcd001674.92E-124689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRSPCSDEN GLKKGPWTSQ EDEKLTNFIN KYGHGSWRAL PKLAGKFSQE EEQTILNLHA  60
VLGNKWSAIA THLPGRTDNE IKNFWNTHLK KKLIRMGYDP MTHRPRTYIF NSLQHLIALA  120
NLKELMEHQY LQNLLQPRNI NFNTSIRDIQ AYNLLNSLSS LNDSQFLGTN NHLENHLIST  180
PNSSLQAIQD LIPFSHLPEL QTSCSFQNLL NKDKVRPQNT DFITVLSHGE MSPTSPWLPS  240
SLSSSPPRPS VTNDQRRKEN SSKVVISSCL PEKRKLPNYL FQSDNERSLN NEGAPPSIWP  300
DLLLENSFFQ DIPKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1712935108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606781.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A1S4BYM20.0A0A1S4BYM2_TOBAC; myb-related protein 330-like
STRINGXP_009606781.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-66myb domain protein 93