PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01745g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 688aa    MW: 77047.1 Da    PI: 9.3425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01745g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.4e-07584633147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av+qlG+g+W+ I  +      +Rt  ++k++w ++
  Niben101Scf01745g03001.1 584 RRPFSVAEVEALVEAVEQLGTGRWRDIKIRAFeyaDHRTYVDVKDKWKTL 633
                               6789999********************999889999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.904.5E-4379459No hitNo description
SuperFamilySSF542363.56E-6388471IPR029071Ubiquitin-related domain
PROSITE profilePS500539.526391461IPR000626Ubiquitin domain
CDDcd017690.00754395461No hitNo description
PROSITE profilePS5129417.374579638IPR017930Myb domain
SMARTSM007176.6E-8583636IPR001005SANT/Myb domain
PfamPF002491.1E-5584633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-10584634IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15585666IPR009057Homeodomain-like
CDDcd116601.42E-15585635No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MSSKKRLDYG LSSYQFPVIP KAPRSVRRRH SHNNLDNDQI CAFELLAAVA GELLQESESS  60
ACSNAAEGKD ELADCKVGVK CEQLKEDKAV KSECFSQGSC VESTYIPEPT ALEQNLKHSL  120
DKPNHVEKNI FHKHNCSIMN SDFSQKDWSC AKLESCKKVD RVGKFHTEIE GGSSNLENAC  180
NKKIETVTQK QLDDDRKQID NLTVANSCSV KGLIEKHVNN NAAINSDNSV QFPLYRAVPK  240
PSFGKQRNNV KLGSRDDDEN SFRSYSHSSK IRAFRKTSRI GYRRIKKILT SRHWKIAPQL  300
KDCERSCFND RVKSFYQNRK RICALERCRV EIPSKRRKLS HYKSAVAYGQ QASSERKSNS  360
PEKGMKRDII PHKGSGASAS AKNHQKMDPC VKFSIKSFNI PELFIEVPET ETVGSLKRSV  420
MEAVKSILGS GLRVGVVLEG KKVRDDNRTL QQAGVSQNGN LDTLGFTLEP SSYPVSPSLL  480
SKDPPASSPC VADHELTRRP PGPILELELP NASSDPSKTK LDKHDEDYLE MAQSPTNPID  540
PTSDVAIPDS RAMVVIPHLN AEALAVVPGS PKNSRYELSQ RRTRRPFSVA EVEALVEAVE  600
QLGTGRWRDI KIRAFEYADH RTYVDVKDKW KTLVHTASIT PQQRRGEPVP QELLDRVLAA  660
HAYWSQQHGK QHIEALKMAD SQVQNVVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-625686881121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318337RKRICALERCRVEIPSKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783131.10.0PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_016497955.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLA0A1S4C9Z90.0A0A1S4C9Z9_TOBAC; telomere repeat-binding protein 4-like
TrEMBLA0A1U7X0E30.0A0A1U7X0E3_NICSY; telomere repeat-binding protein 4-like
STRINGXP_009783131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-106TRF-like 2