PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01738g07002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 282aa    MW: 32092.7 Da    PI: 8.2298
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01738g07002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.7e-092873346
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                              +WT+eE + + da +++ ++    W  +a++++ g+t ++++  ++ 
  Niben101Scf01738g07002.1 28 KWTAEENKMFEDALALFDKDtpdKWYNVAAMIP-GKTVNDVIKQYRE 73
                              8********************************.********99986 PP
2Myb_DNA-binding46.39.9e-15137181347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Niben101Scf01738g07002.1 137 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 181
                               8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-42374IPR009057Homeodomain-like
PROSITE profilePS512937.832479IPR017884SANT domain
SMARTSM007171.2E-92577IPR001005SANT/Myb domain
CDDcd001673.10E-72875No hitNo description
SuperFamilySSF466891.65E-112881IPR009057Homeodomain-like
PfamPF002493.4E-72874IPR001005SANT/Myb domain
PROSITE profilePS5129421.106130186IPR017930Myb domain
SuperFamilySSF466891.87E-17132185IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-18133185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-12134181IPR009057Homeodomain-like
SMARTSM007173.5E-13134184IPR001005SANT/Myb domain
CDDcd001677.17E-11137182No hitNo description
PfamPF002493.6E-12137181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNREMGFLSP ATYIKNSSWL FEENKVTKWT AEENKMFEDA LALFDKDTPD KWYNVAAMIP  60
GKTVNDVIKQ YRELVEDISD IEAGLIPVPG YTTSNSFTLE WVNNQDGFHG FKQFYGQNGK  120
RGASNRSSEH ERKKGVPWTE EEHRQFLLGL KKYGKGDWRN ISRNFVTTRT PTQVASHAQK  180
YFIRQLSGGK DKRRSSIHDI TVVNLSESKS STSPDNHSQH HSMVKTLCDY NSPNQESDLT  240
FNSSTGSLIN TPARGISSYG LEHGMHNITL QSLQFGNYNT MC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1829941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250230.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-102DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1J6I7840.0A0A1J6I784_NICAT; Transcription factor myb1r1
STRINGXP_009786719.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-113MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]