PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01734g01062.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 262aa MW: 29288.1 Da PI: 6.1744

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01734g01062.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.6	1.2e-24	93	179	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +r+ r gCka++ vkke++gk +v+kl++eHn Niben101Scf01734g01062.1 93 YYSTYATHLGFVMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQNQ--NGQRKCRAIREGCKAMIIVKKEQSGKGVVAKLVKEHN 175 8***************************************9988..778888889************************ PP FAR1 87 Hela 90 H+l+ Niben101Scf01734g01062.1 176 HALV 179 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-22	93	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVVDENNNAT DDAEMVESSS GKGLTTNGVE AEGRLNIEPY VMDENNTTAD DGEMVLSYSG 60 MELTRNGVAA EGRPNLEPYV GMEFESEEAA KAYYSTYATH LGFVMRVDAF RRSMRNGELV 120 WRRLVCNKEG FSKSRQNQNG QRKCRAIREG CKAMIIVKKE QSGKGVVAKL VKEHNHALVV 180 KPANTRIGSI LCQTPDDKDV KIRELTAELQ KERKRSGVLQ EQLDMVLKDM EDHSDQLSKN 240 INDIVKSVKE LESRKIVSPN SG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230248.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A314KJQ6	0.0	A0A314KJQ6_NICAT; Protein far1-related sequence 5
STRING	XP_009620544.1	1e-180	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-80	FAR1 family protein