PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01727g03004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 282aa    MW: 32031.5 Da    PI: 5.6563
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01727g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1789142356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  Niben101Scf01727g03004.1  89 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 142
                               4557899*********************************************99 PP
2HD-ZIP_I/II128.62.6e-4188179192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L+++++
  Niben101Scf01727g03004.1  88 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNK 172
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               +L++el+
  Niben101Scf01727g03004.1 173 KLHSELQ 179
                               ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1884146IPR009057Homeodomain-like
SMARTSM003898.2E-1887148IPR001356Homeobox domain
PROSITE profilePS5007116.1888144IPR001356Homeobox domain
CDDcd000861.22E-1589145No hitNo description
PfamPF000467.9E-1589142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1891151IPR009057Homeodomain-like
PRINTSPR000311.2E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5124140IPR000047Helix-turn-helix motif
CDDcd146860.00959135179No hitNo description
PfamPF021839.8E-15144182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLFSSTGTMA FATPETNSVD FRNHEAANDD PPSSFPSHVF PSSCPPHQEF QGISPLLMRR  60
AMSFDHNQES RVEDDMSDDD GSSQLLGEKK RRLNLEQVKA LERSFEMGNK LEPERKMQLA  120
RALGLKPRQI AIWFQNRRAR CKTKQLEKDY EILKRQCDKL KADNDALKTQ NKKLHSELQL  180
LSLGNQESAG GTPAILFNLN KENEGCNWNN NGSGDENNST IDVNLGTTTR TSSTNSPLNN  240
HDVFPTAYKV DQTVNEEGFC NMFTNVEDQN NFWPLPVQQH FY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARCKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775432.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
RefseqXP_016490250.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
TrEMBLA0A1S4BN140.0A0A1S4BN14_TOBAC; homeobox-leucine zipper protein HAT7-like isoform X1
TrEMBLA0A1U7W5X80.0A0A1U7W5X8_NICSY; homeobox-leucine zipper protein HAT7-like isoform X1
STRINGXP_009775432.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-55homeobox 3