PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01701g12017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 432aa    MW: 48904.1 Da    PI: 6.5679
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01701g12017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.1e-093593961954
                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Niben101Scf01701g12017.1 359 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 396
                               554459******************************88 PP
2BELL100.11.8e-32221292172
                      BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               er+el  k+ kL++lleeV++rY+qy++ ++ + s Fe++ag g+ kpYt+lAl+a+SrhF cL+dai++ i
  Niben101Scf01701g12017.1 221 ERHELYVKIMKLITLLEEVERRYEQYYQHMEEITSTFEVIAGFGAGKPYTALALQAMSRHFSCLRDAIISEI 292
                               799*****************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.8E-29153290IPR006563POX domain
PfamPF075261.5E-37159288IPR006563POX domain
PROSITE profilePS5007112.034337400IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-27339413IPR009057Homeodomain-like
CDDcd000868.56E-11340401No hitNo description
SMARTSM003891.6E-9340404IPR001356Homeobox domain
SuperFamilySSF466891.11E-17346408IPR009057Homeodomain-like
PfamPF059202.9E-17357396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MVSTDSPPPT HSSILHQFIN SDSITSQIGS QHFDIYQAGL SANTTSYQPP GVLSRSIEFV  60
NPTHFTTDSD VNNSRHLMDL LGASHDANQQ AQRLSLSLSS HSLVSSLHCR ERALSSSFTN  120
PSYITQEIDH RNNEFSFSAA AMNQSFSNVC GTESFVAAIG NSKYLKPTQS LLEELVCAGG  180
KTIDLSNEKF IRRLSRNSKK GSLSLRAMLK SEIPSNELFN ERHELYVKIM KLITLLEEVE  240
RRYEQYYQHM EEITSTFEVI AGFGAGKPYT ALALQAMSRH FSCLRDAIIS EIYVIRQKMA  300
RDVPKISSGL SHLSLFEKET LQNRMSLQQL GIIQSNRQAW RPIRGLPETS VSILRSWLFE  360
HFLHPYPNDS EKLMLASQTG LSKNQVSNWF INARVRLWKP MIEEMYNEEF AESSVDSDPI  420
LNREGFTDST EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16346404563Homeobox protein Meis2
3k2a_B3e-16346404563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761064.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X1
RefseqXP_009761065.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X1
RefseqXP_016434169.10.0PREDICTED: BEL1-like homeodomain protein 11
RefseqXP_016434177.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-96BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A1S3X2L30.0A0A1S3X2L3_TOBAC; BEL1-like homeodomain protein 11
TrEMBLA0A1U7VFF60.0A0A1U7VFF6_NICSY; BEL1-like homeodomain protein 11 isoform X1
STRINGXP_009761064.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-91BEL1-like homeodomain 11