PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01701g12003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 622aa MW: 70033.9 Da PI: 5.6443 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 411 | 448 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Niben101Scf01701g12003.1 411 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 448 554459******************************88 PP | |||||||
2 | BELL | 122.6 | 1.6e-39 | 277 | 348 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r++l++k +kL s+l+eVd+rYk y++q+q+v+ssFe+vaglg+akpYtslAlk+iSr+FrcL+dai++qi Niben101Scf01701g12003.1 277 DRHDLESKMTKLFSMLDEVDRRYKEYYQQMQAVVSSFEMVAGLGAAKPYTSLALKTISRQFRCLRDAIKKQI 348 6899*******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-56 | 201 | 346 | IPR006563 | POX domain |
Pfam | PF07526 | 2.0E-47 | 207 | 344 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.341 | 389 | 452 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-10 | 392 | 456 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.82E-12 | 392 | 453 | No hit | No description |
SuperFamily | SSF46689 | 2.78E-17 | 393 | 458 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 395 | 458 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.0E-17 | 409 | 448 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 622 aa Download sequence Send to blast |
MSAYYSNLSN QREVLPMSFL PDQKFDSYHS AGLSDSSIHL NQHSSTVSYS ELPAQNYGEV 60 QTIRGKDEML FIPPTSESGG MEPIGRSVNA SPNFLENSIM MGPRSFPTKQ FFVPNIDQSL 120 QNQGLSLSLG TQVPPSLHVY SYQDDYTNSG LSSLVGTHVL HSEQGSENKE SKVAEYLSFD 180 LSRGTRAENS PQNSMSLRDM NAGARSIYNS KYLKAAQDLL DEVVNVQEAL KQSDRLHNFN 240 LLGQDRSEEA GLKSSCSASG ISGDHNNSTK GELSPADRHD LESKMTKLFS MLDEVDRRYK 300 EYYQQMQAVV SSFEMVAGLG AAKPYTSLAL KTISRQFRCL RDAIKKQIQV TRRSLGEQGN 360 SQGERLYRLR YVDQQLRQQR SLQQFGMMRQ PWRPQRGLPE TAVSVLRAWL FEHFLHPYPK 420 DSEKIMLARQ TGLTRSQVAN WFINARVRLW KPMIEDMYKE EFGETEAGSR ASPDRAPEES 480 KEKTIAENTG EEIPESFTAP AINCSHLDPS EESSNVVTNV QNNSFITKFN FQDGAYEHEK 540 IDAVNTYHAS MLGDIMGNQV SLALRLQNSQ IDQQPISGRT QLTEDDKTGS TLDISKGEYY 600 YIDPVNQQER FSGPHLLSDF VA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 398 | 455 | 5 | 62 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 398 | 455 | 5 | 62 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 398 | 455 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 398 | 455 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019243801.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 isoform X1 | ||||
Refseq | XP_019243802.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 isoform X1 | ||||
TrEMBL | A0A1J6IJI0 | 0.0 | A0A1J6IJI0_NICAT; Bel1-like homeodomain protein 6 | ||||
STRING | XP_009761063.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11258 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-104 | BEL1-like homeodomain 6 |