PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01701g03007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26967.6 Da PI: 4.6696 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f ++Aa a++aa++kl+g Niben101Scf01701g03007.1 36 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFENSYDAAVAYDAAARKLYG 85 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.01E-17 | 35 | 95 | No hit | No description |
PROSITE profile | PS51032 | 21.443 | 36 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 36 | 94 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-31 | 36 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-10 | 36 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-29 | 36 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSSTYSVERK TKKLTQATSR KGCMRGKGGP ENASCTYKGV RQRTWGKWVA EIREPNRGAR 60 LWLGTFENSY DAAVAYDAAA RKLYGADAKL NLPHLYSKQA QAQNSRPNTM GLDNAGGPVS 120 TPPTCNPAAV YNVASPSTWS MGNDNTSFYF NNDFGNNSFS TADQTSFQFL DINQTAEEFD 180 ENNINQNDGI GGEMWRDLNM NLPEIDDSSI WEEAKASTSF QEAVTDPGIY ACNLADGINY 240 PPWCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-17 | 37 | 93 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019257929.1 | 1e-171 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A1J6IL77 | 1e-169 | A0A1J6IL77_NICAT; Dehydration-responsive element-binding protein 2d | ||||
STRING | XP_009767687.1 | 1e-163 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-41 | ERF family protein |