PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01697g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 325aa    MW: 35994.2 Da    PI: 5.8097
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01697g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.62.9e-2736132186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                               rWt+qe+l+Li+++r  e+r+rrg+           + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++e
  Niben101Scf01697g05002.1  36 RWTRQEILVLIQGKRVAESRVRRGRtaglelgsgsgQVEPKWASVSSYCKKHGVNRGPVQCRKRWSNLAGDFKKIKEWECGIKEE 120
                               8**********************9778888888888**********************************************999 PP

                  trihelix  75 ssstcpyfdqle 86 
                               s+s +++ ++l+
  Niben101Scf01697g05002.1 121 SESFWVMRNDLR 132
                               9999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1136127No hitNo description
Gene3DG3DSA:1.10.10.608.0E-536103IPR009057Homeodomain-like
PROSITE profilePS500906.30736104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALEPLTLAF DGDSNDGRQQ SVNGADDGNR APRLPRWTRQ EILVLIQGKR VAESRVRRGR  60
TAGLELGSGS GQVEPKWASV SSYCKKHGVN RGPVQCRKRW SNLAGDFKKI KEWECGIKEE  120
SESFWVMRND LRRERKLPGF FDKEVYEILD RGSGGEEMEA GLALALAPAA AVNEPEALFD  180
SGRSAAADEG LFSDFEQSEA GDKDKHMPIP APTPISEQQC QPLPMECHAQ GINRQKEPTS  240
NPDGGSAQEG KKRKRGVTDT DEEADNLQYQ LAKALERNGN LLSSQLEAQN AHYQLDREQR  300
KDHVKSLIAV LDKLADAMGR IADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249255GKKRKRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791337.10.0PREDICTED: uncharacterized protein LOC104238623 isoform X1
RefseqXP_016472490.10.0PREDICTED: trihelix transcription factor ASR3-like
SwissprotQ8VZ201e-109ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1S4A7850.0A0A1S4A785_TOBAC; trihelix transcription factor ASR3-like
TrEMBLA0A1U7XGZ10.0A0A1U7XGZ1_NICSY; uncharacterized protein LOC104238623 isoform X1
STRINGXP_009791337.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-108Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]