PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01695g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 152aa    MW: 17350.6 Da    PI: 4.4567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01695g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.4e-152877255
                       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              + +GVr+++ +grW+ eIrd p     r kr++lg+++ +eeA   +++a+ kl g
  Niben101Scf01695g01005.1 28 KLRGVRQRP-WGRWAEEIRDpP-----RgKRVWLGTYDIPEEATTIYDEAAVKLTG 77
                              78*******.**********99.....56************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.8E-4715152IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000186.57E-272784No hitNo description
SuperFamilySSF541712.88E-182884IPR016177DNA-binding domain
PfamPF008475.1E-92877IPR001471AP2/ERF domain
PROSITE profilePS5103220.6662885IPR001471AP2/ERF domain
SMARTSM003802.3E-252891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-252985IPR001471AP2/ERF domain
PRINTSPR003671.3E-72940IPR001471AP2/ERF domain
PRINTSPR003671.3E-75167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MWITNCAIDS QAIIILLSSD TDVTRRKKLR GVRQRPWGRW AEEIRDPPRG KRVWLGTYDI  60
PEEATTIYDE AAVKLTGPNA VTNFLKVLTA DITETDSVNN GWEKSENDVV LSPTSVLRND  120
YFTPFDNLWF CEVDAFGFEV DSLFRLPVFG MS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-162784159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-162784462ATERF1
3gcc_A1e-162784462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798127.11e-78PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046824e-60PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1U7Y1V43e-77A0A1U7Y1V4_NICSY; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009798127.14e-78(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-25cytokinin response factor 2