PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01694g12010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 28207.4 Da PI: 8.4257 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 108 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++vkq+G + W+ Ia++m R +kqc++rw+++l Niben101Scf01694g12010.1 108 KGQWTDEEDRKLVRLVKQFGERKWAQIAQKMY-ARAGKQCRERWHNHL 154 799****************************9.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.19 | 103 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.39E-17 | 104 | 161 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-22 | 107 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 7.8E-16 | 111 | 162 | No hit | No description |
CDD | cd00167 | 2.34E-14 | 111 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MESGSVFRLY QNLPKPRPPL TVIDRFSLSH ENYFYPFSGA NASSSSSSSH ANGISWPKSL 60 PDPSFIEGFF LNEQENGLIE DAKTVQENKK ESWKKEEKGN STKNYLVKGQ WTDEEDRKLV 120 RLVKQFGERK WAQIAQKMYA RAGKQCRERW HNHLLPDIKN KNGHRQRWEL HGDYNTKEVN 180 QQYHSQHYYC PDIYLSYFLD GSSYMMNEAA AGCSSGGNNK VEIDLMEMVS SSHLPKGAFN 240 NTFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-17 | 106 | 159 | 5 | 58 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592355.1 | 5e-93 | PREDICTED: myb-like protein Q | ||||
TrEMBL | A0A314KYM7 | 9e-84 | A0A314KYM7_NICAT; Transcription factor myb98 | ||||
STRING | XP_009592355.1 | 2e-92 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 3e-26 | myb domain protein 119 |