PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01687g12007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 561aa    MW: 61057.9 Da    PI: 8.9402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01687g12007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-16361407455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Niben101Scf01687g12007.1 361 VHNLSERRRRDRINEKMRALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 407
                               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-21355424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.355357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-17360411No hitNo description
PfamPF000101.4E-13361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-21361415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MNHSIPDFDM DDDYTIPTSS GLTRPKKSAM AEEDIMELLW HNGQVVMQSQ NQRSLKKSHI  60
SNDGGSGDAL IPSEQAVSRE IRHVEETTTP QQLRTRWLHG FTTHLMTPPP SNVIFTPISF  120
IPHRAQPLQP LRRLEKSVRP RATVTTAAPP REIRTPTVEI RPPPPQPSPA APIAVAPRPP  180
IPPARRPGTE SSHRFQNFGH FSRLPSRTRS ELGPSNSSKS PRESTVVDSN ETPISGPESR  240
VSHVADNVVP VPGGNVACGA VNVTGTTTAS TAIREPATTC ELSVTSSPGS GNSINASAEL  300
PPSQTVALAT PTAAASNDRK RKGIETDDRD GQNEDAEFES GDTKKHACGS TSTKRSRAAE  360
VHNLSERRRR DRINEKMRAL QELIPRCNKT DKASMLDEAI EYLKSLQLQV QMMSMGCGMV  420
PMMYPGMQQY MPAMGMGMVG MGMEIGMNRP MVPYPPLLPG AAMQNAAAAA QMGPRFPMAP  480
FHLPPVPVPD PSRMQASSQQ DLMLNPLVAR NPNQPRLPNF NDPYQQFFGL HQAQNQAVEQ  540
QGYNKSGSSK EVGNPGNPQS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365370ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251630.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1J6JNV30.0A0A1J6JNV3_NICAT; Transcription factor pif1
STRINGXP_009591396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-39phytochrome interacting factor 3-like 5