PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01679g03020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 320aa MW: 37813.6 Da PI: 9.7108

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01679g03020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	30.6	9.2e-10	156	220	29	95
DUF573 29 spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +++ d+ +y f+++++++kv + + +Kir L + +++k +g++p+f++++d ifelsk + Niben101Scf01679g03020.1 156 EVTRDMYSIYYFIEEKLQVKVDRLRMNDKIRGLERNLFVNSEK--KGENPVFTNPQDYLIFELSKNL 220 6778******************************9999999..9****************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MYSIYYFIEE KLQVKVDRLR MNDKIRGLER NLFVNSEKKG ENPVFTNPQD YLIFELSKNL 60 RGDDYLVYEY SKKIYGVKVS GGSINRLVKN VNNERDQSKY PHLAATFNVM KKNMSLVNSD 120 KMTNLEEKLK KLDEEETDLR IKRLDLIREN CKLVAEVTRD MYSIYYFIEE KLQVKVDRLR 180 MNDKIRGLER NLFVNSEKKG ENPVFTNPQD YLIFELSKNL RGDDYLVYEY SKKIYGVKVS 240 GGSINRLVKN SKYPHLAATF NVMKKNMSLV NSDKMTNLEE KLKKLDEEET DLRIKRLDLI 300 RENCKLVAEV TRDLTRSIKI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800473.1	4e-82	PREDICTED: uncharacterized protein LOC104246363
Refseq	XP_016476085.1	4e-82	PREDICTED: uncharacterized protein LOC107797691
TrEMBL	A0A1S4AHA4	9e-81	A0A1S4AHA4_TOBAC; uncharacterized protein LOC107797691
TrEMBL	A0A1U7YBH2	9e-81	A0A1U7YBH2_NICSY; uncharacterized protein LOC104246363
STRING	XP_009800473.1	2e-81	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41