PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01671g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 444aa    MW: 48745.2 Da    PI: 7.4522
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01671g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.4e-40151228178
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               +Cqv++C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Niben101Scf01671g03003.1 151 CCQVQDCRADLSNAKDYHRRHKVCDVHSKAAKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 228
                               6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-31146213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.035149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-37150231IPR004333Transcription factor, SBP-box
PfamPF031104.4E-29152225IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDAHNYHGPV SGKKSDEWRS NEWIWDGDLF TAARQNNISL PSDCCKSKQL MFPIGSEIHP  60
EASRISNCFS STSDELLTLG SNDKGRKELE KRRRAIVIED DELDNEEEAG SLNLKLGGQL  120
YPVMEGDEEK LEGKSGKKTK IVGVSSNRAV CCQVQDCRAD LSNAKDYHRR HKVCDVHSKA  180
AKALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPEN VANGASMNHE  240
GGINYLLISL LRILTNLQSN SSDQTKDQDL LSHLMRNLAS LAGATNERNT SGLLSAPPEQ  300
RNVGTSMGAP KEDFLRPTGN CLIPASEVTE KRMSRSDVEY GISQNPCAWQ PDSLCCGKES  360
SPINANASAK VKLNNIDLNN IYDGSQDGNQ KLQNFDASAN PGATSSGWPL WICHDPHKSS  420
PGTSGNSGST SSLSLSNSSG EAQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301522251184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231177.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLA0A314KHV10.0A0A314KHV1_NICAT; Squamosa promoter-binding-like protein 12
STRINGXP_009793310.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.12e-60squamosa promoter-binding protein-like 12