PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01669g04022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 268aa    MW: 30578.6 Da    PI: 9.6812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01669g04022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-163482355
                       AP2  3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              + GVr+++ +g+WvAeI++       +  r +lg++gtaeeAa a+++a+  l+g
  Niben101Scf01669g04022.1 34 FVGVRQRH-SGKWVAEIKEtT-----KeIRMWLGTYGTAEEAAHAYDQAAVLLRG 82
                              78*****9.7*********33.....35**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.91E-273389No hitNo description
Gene3DG3DSA:3.30.730.102.3E-263390IPR001471AP2/ERF domain
PROSITE profilePS5103218.613390IPR001471AP2/ERF domain
SMARTSM003801.0E-313396IPR001471AP2/ERF domain
PfamPF008471.2E-113478IPR001471AP2/ERF domain
PRINTSPR003673.5E-63445IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-183491IPR016177DNA-binding domain
PRINTSPR003673.5E-65672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEINFQKQQQ TEAISKNKLA KLKGKRRSKS RNNFVGVRQR HSGKWVAEIK ETTKEIRMWL  60
GTYGTAEEAA HAYDQAAVLL RGSNTRTNFV TRVSQDSPLA SRIRNLLHSK KIAKQKCLDY  120
TVVSTSSNSV QSSLNISSSS SLMISNCDDS ISSENNTQNF ISIKKSKKKV NCFIRPTYLI  180
LPWAHQHIHL SQPELSWGFG EGFEFAQELL DIPKNVISAE MGLTEYDIMK VERQISASLY  240
AVNGVRDYME SVYDPYESLW DHPLSNYW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763628.11e-139PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_016487974.11e-139PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY882e-66ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A1S4BGH21e-137A0A1S4BGH2_TOBAC; ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1U7VB841e-137A0A1U7VB84_NICSY; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009763628.11e-138(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-25related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]