PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01658g01010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1019aa    MW: 113251 Da    PI: 4.8989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01658g01010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.2e-1864108348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                WT+eEde+l +av+q+ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Niben101Scf01658g01010.1  64 QWTPEEDEILRQAVQQFKGKSWKRIAECFK-DRTDVQCLHRWQKVL 108
                               7****************************9.************986 PP

2Myb_DNA-binding44.63.2e-14113152848
                               HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               Ed++l+++v+++G++ W+tIa+++  gR +kqc++rw+++l
  Niben101Scf01658g01010.1 113 EDDKLIELVNRYGPKKWSTIAQELA-GRIGKQCRERWHNHL 152
                               9************************.*************97 PP

3Myb_DNA-binding45.81.4e-14158200145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               + +WT+eE++ l++a++ +G++ W+  a+ +  gR+++ +k++w+
  Niben101Scf01658g01010.1 158 KEPWTQEEELTLIRAHQVYGNK-WAELAKVLH-GRSDNAIKNHWH 200
                               679*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.01E-1557112IPR009057Homeodomain-like
PROSITE profilePS5129424.67557112IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-1758112IPR009057Homeodomain-like
SMARTSM007173.0E-1461110IPR001005SANT/Myb domain
PfamPF002491.9E-1564108IPR001005SANT/Myb domain
CDDcd001679.79E-1465108No hitNo description
SMARTSM007173.5E-9111154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-23113159IPR009057Homeodomain-like
PROSITE profilePS5129412.769113152IPR017930Myb domain
PfamPF139212.5E-16113167No hitNo description
CDDcd001672.54E-12113152No hitNo description
SuperFamilySSF466897.11E-27132208IPR009057Homeodomain-like
PROSITE profilePS5129423.843153207IPR017930Myb domain
SMARTSM007173.1E-14157205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-21160207IPR009057Homeodomain-like
CDDcd001671.05E-10160200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MCTEFVVLLR IFDLWMLDYP DLPLSQATME SDKTSTTPSD DISSLQRVLP SHGRTSGPKR  60
RSSQWTPEED EILRQAVQQF KGKSWKRIAE CFKDRTDVQC LHRWQKVLDP ELEDDKLIEL  120
VNRYGPKKWS TIAQELAGRI GKQCRERWHN HLNPSINKEP WTQEEELTLI RAHQVYGNKW  180
AELAKVLHGR SDNAIKNHWH SSVKKKLDSY LASGLLAQFP ALPNVNHQNQ SVPSSSMTSQ  240
QNSEDESIHK EGREAEDSSV KKKLDSYLAS GLLGQFPALP NVNHQNQSVP SSSMTLQQNS  300
EDDSVHKEGT EAEEVPECSQ GSNFAGCSQS TSGSGNTFVY IRENGGMSEE SIGKKDATSS  360
TAPCCSNYSP VFQDVSCSML KVHSELVDSK FLEHNLSHDW GNSMEEDWQF NRDDIPNISP  420
PEFIQESSGI SMHCLNGNDN HDMVATANVG NVVEGPYKPN KMFISVDSSV MVYSEEGIPQ  480
CSPSETGVNG CGQPAYPLFY QSSNYQIPEV GDMVPQNCNA LSFDDFEPSF HQPFSVPSQF  540
SSEDRSPVFD IVLNQFHNPP LEGPDHMKDS SRIVPVNDVG STTPNPVQTC LQNENSFVQE  600
EQKDGGALCY DPPRFPSSDV PFFCCDLIQS GSDTQEEYSP FGIRQLMMTS ANRLTPLRLW  660
DSPSRDDSPD AILKSAAKTF TGTPSILKKR HRHLLSPLSE NRCEKKLESN LNQESFSNMS  720
TNFSRLDDMF DESANEKASM EDKENLHPSS EDGRKEEGEI SGASDATGMH PGVLVELRSN  780
DLFLSPDRFL IKCDRATSQS NKALGKQYAR RLEAASNQVT VPSSFETSCL SVVCSPEIRG  840
KRRSSVVIAT SAASGNTAKD SENGFGAETL SIFGETPFKR SIESPSAWKS PWFMSSFPPS  900
TRDDTELAFE DLALFMSPGD RSYDAIGLMK QLSEQTAPSI ADAHQILGSE TPETNLSKRN  960
SKKPKADENC TLLASNAMSE RRPLEFIECG TPGKGKETTK FGSNNSFSSP SSYLLKYCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-57632077159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-57632077159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473293.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_016473294.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_016473295.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A1S4A9H40.0A0A1S4A9H4_TOBAC; myb-related protein 3R-1-like
STRINGXP_009627768.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.15e-92Homeodomain-like protein