PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01658g01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 1019aa MW: 113251 Da PI: 4.8989 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3.2e-18 | 64 | 108 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEde+l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l Niben101Scf01658g01010.1 64 QWTPEEDEILRQAVQQFKGKSWKRIAECFK-DRTDVQCLHRWQKVL 108 7****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.2e-14 | 113 | 152 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed++l+++v+++G++ W+tIa+++ gR +kqc++rw+++l Niben101Scf01658g01010.1 113 EDDKLIELVNRYGPKKWSTIAQELA-GRIGKQCRERWHNHL 152 9************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 45.8 | 1.4e-14 | 158 | 200 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ a+ + gR+++ +k++w+ Niben101Scf01658g01010.1 158 KEPWTQEEELTLIRAHQVYGNK-WAELAKVLH-GRSDNAIKNHWH 200 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.01E-15 | 57 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.675 | 57 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 58 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 61 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 64 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.79E-14 | 65 | 108 | No hit | No description |
SMART | SM00717 | 3.5E-9 | 111 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 113 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.769 | 113 | 152 | IPR017930 | Myb domain |
Pfam | PF13921 | 2.5E-16 | 113 | 167 | No hit | No description |
CDD | cd00167 | 2.54E-12 | 113 | 152 | No hit | No description |
SuperFamily | SSF46689 | 7.11E-27 | 132 | 208 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.843 | 153 | 207 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 157 | 205 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 160 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-10 | 160 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1019 aa Download sequence Send to blast |
MCTEFVVLLR IFDLWMLDYP DLPLSQATME SDKTSTTPSD DISSLQRVLP SHGRTSGPKR 60 RSSQWTPEED EILRQAVQQF KGKSWKRIAE CFKDRTDVQC LHRWQKVLDP ELEDDKLIEL 120 VNRYGPKKWS TIAQELAGRI GKQCRERWHN HLNPSINKEP WTQEEELTLI RAHQVYGNKW 180 AELAKVLHGR SDNAIKNHWH SSVKKKLDSY LASGLLAQFP ALPNVNHQNQ SVPSSSMTSQ 240 QNSEDESIHK EGREAEDSSV KKKLDSYLAS GLLGQFPALP NVNHQNQSVP SSSMTLQQNS 300 EDDSVHKEGT EAEEVPECSQ GSNFAGCSQS TSGSGNTFVY IRENGGMSEE SIGKKDATSS 360 TAPCCSNYSP VFQDVSCSML KVHSELVDSK FLEHNLSHDW GNSMEEDWQF NRDDIPNISP 420 PEFIQESSGI SMHCLNGNDN HDMVATANVG NVVEGPYKPN KMFISVDSSV MVYSEEGIPQ 480 CSPSETGVNG CGQPAYPLFY QSSNYQIPEV GDMVPQNCNA LSFDDFEPSF HQPFSVPSQF 540 SSEDRSPVFD IVLNQFHNPP LEGPDHMKDS SRIVPVNDVG STTPNPVQTC LQNENSFVQE 600 EQKDGGALCY DPPRFPSSDV PFFCCDLIQS GSDTQEEYSP FGIRQLMMTS ANRLTPLRLW 660 DSPSRDDSPD AILKSAAKTF TGTPSILKKR HRHLLSPLSE NRCEKKLESN LNQESFSNMS 720 TNFSRLDDMF DESANEKASM EDKENLHPSS EDGRKEEGEI SGASDATGMH PGVLVELRSN 780 DLFLSPDRFL IKCDRATSQS NKALGKQYAR RLEAASNQVT VPSSFETSCL SVVCSPEIRG 840 KRRSSVVIAT SAASGNTAKD SENGFGAETL SIFGETPFKR SIESPSAWKS PWFMSSFPPS 900 TRDDTELAFE DLALFMSPGD RSYDAIGLMK QLSEQTAPSI ADAHQILGSE TPETNLSKRN 960 SKKPKADENC TLLASNAMSE RRPLEFIECG TPGKGKETTK FGSNNSFSSP SSYLLKYCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-57 | 63 | 207 | 7 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-57 | 63 | 207 | 7 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473293.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_016473294.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_016473295.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A1S4A9H4 | 0.0 | A0A1S4A9H4_TOBAC; myb-related protein 3R-1-like | ||||
STRING | XP_009627768.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 5e-92 | Homeodomain-like protein |