PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01655g03013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 331aa    MW: 37189.1 Da    PI: 7.809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01655g03013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde++v+++k++G g+W++ ++  g+ R++k+ ++rw +yl
  Niben101Scf01655g03013.1 14 KGPWTPEEDEKIVEYIKKHGHGSWRSLPNLAGLLRCGKSRRLRWTNYL 61
                              79******************************99************97 PP
2Myb_DNA-binding445.3e-1467109145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg++++eE++l ++++  lG++ W++Ia+ ++ gRt +++k+ w+
  Niben101Scf01655g03013.1  67 RGPFSPEEEKLVIQLHGILGNR-WAAIASQLP-GRTVNEIKNLWN 109
                               89********************.*********.*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.143961IPR017930Myb domain
SuperFamilySSF466892.09E-2711108IPR009057Homeodomain-like
SMARTSM007171.7E-101363IPR001005SANT/Myb domain
PfamPF002491.6E-131461IPR001005SANT/Myb domain
CDDcd001675.46E-91661No hitNo description
PROSITE profilePS5129423.05262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2365116IPR009057Homeodomain-like
SMARTSM007172.3E-1366114IPR001005SANT/Myb domain
PfamPF002494.3E-1367109IPR001005SANT/Myb domain
CDDcd001671.50E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRTPCCDQK GLKKGPWTPE EDEKIVEYIK KHGHGSWRSL PNLAGLLRCG KSRRLRWTNY  60
LRPDIKRGPF SPEEEKLVIQ LHGILGNRWA AIASQLPGRT VNEIKNLWNI HLKKRLFSMG  120
IDLLTHEPSN GMLRRPPTST SACHMAQWES ARLEAEARLS RESQLLVPSS AGRSETDYFL  180
RIWNSEIGEA FRKFKNGDKC QSPASQISSS TKYGSASGIT TEMDLTLAED TECKDSQPYI  240
EDILQGSDTS SSSELEDSSE SALQLLLDFP SNNDMSFLGF LSDSSLNCSL AEHRVGSLNM  300
VVVKAYIVEN LFFSRLVRSY TDKKHTTKLD A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458219.10.0PREDICTED: transcription factor MYB122-like
SwissprotQ9M2D91e-116MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S3Z1A00.0A0A1S3Z1A0_TOBAC; transcription factor MYB122-like
STRINGXP_009629649.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-108myb domain protein 17