PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01627g03009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 314aa MW: 35068.4 Da PI: 6.6807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01627g03009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3e-14	122	168	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Niben101Scf01627g03009.1 122 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 168 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	119	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	122	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-15	123	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-15	123	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	125	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-5	132	171	No hit	No description
CDD	cd04873	1.11E-6	207	254	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.2E-4	207	263	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MQPQSFNINP VHFPSNSEMS QILPWTLPPV QPFNPVHHLH HVDPFLLPPT PSPYGGLFNR 60 RVPQFAYEGT TSSDHHLRFI SDTLGHVVHH QPAGSAPFGL QAELQKMTAQ EIMDAKALAA 120 SKSHSEAERR RRERINNHLA KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAETSP 180 VPTEIDELTV DNASDEFEDG KFVIKASLCC EDRSDLLPDL VKTLKALRLK TLKAEITTLG 240 GRVRNVLFIT GDHNYNQDDD LSTSDDLDQH QQQPQYSISS IQEALKAVME KSNGDDSASG 300 SVKRQRTNNI NILS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	132	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009614307.1	0.0	PREDICTED: transcription factor bHLH30-like
Refseq	XP_016496563.1	0.0	PREDICTED: transcription factor bHLH30-like, partial
Refseq	XP_018630033.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-101	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1S4C632	0.0	A0A1S4C632_TOBAC; transcription factor bHLH30-like
STRING	XP_009614307.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-81	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]