PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01623g12020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 409aa    MW: 46338.6 Da    PI: 4.6103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01623g12020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rgrWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf01623g12020.1 14 RGRWTAEEDEILTKYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWMNYL 61
                              8*******************************99************97 PP

2Myb_DNA-binding51.62.2e-1667112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+ T +E+++++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf01623g12020.1  67 RGNITSQEEDIIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                               7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.053961IPR017930Myb domain
SuperFamilySSF466892.17E-2811108IPR009057Homeodomain-like
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
PfamPF002499.6E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-211568IPR009057Homeodomain-like
CDDcd001671.07E-81661No hitNo description
PROSITE profilePS5129424.56462116IPR017930Myb domain
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.1E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2569116IPR009057Homeodomain-like
CDDcd001671.38E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILTKYIQ TNGEGSWRSL PKNAGLLRCG KSCRLRWMNY  60
LRSDLRRGNI TSQEEDIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKVESLR  120
IPSDDKLPQA VVDLANRGTL NPIKCRVRTI KKKRTLKKSA SSLSEPKKPK ESNEPLNSIV  180
PMPSTLNMEK EALSSSISSW LDGNAMEEVA NVAAPNPWSE SRVVQSNLSS DNGMEWLDEI  240
MPMVMDDQDT DVNEFILTCL DDGQGEKVTN EAENKGGTTN RSNEHNDKDH DNKMVSSEDT  300
QLESSPESDA VSFNILKDVQ ENSNETKLFM EDSAVEWDWQ EIAEDRREVW PWEETGQDNM  360
SINHSWPLWD STDTELLQNC TNEITVEMGS NQNHSALVAE YSLVAWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246268.10.0PREDICTED: transcription factor MYB12-like
SwissprotQ9FJ075e-73MY111_ARATH; Transcription factor MYB111
TrEMBLA0A1J6JAW10.0A0A1J6JAW1_NICAT; Transcription factor myb12
STRINGXP_009787226.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-75myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]