PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01611g11002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 214aa    MW: 23677.4 Da    PI: 6.1273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01611g11002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-182272155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Niben101Scf01611g11002.1 22 PDYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 72
                              68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-312282No hitNo description
PfamPF008474.0E-122272IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-212381IPR016177DNA-binding domain
PROSITE profilePS5103222.9192380IPR001471AP2/ERF domain
SMARTSM003809.7E-362386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-312381IPR001471AP2/ERF domain
PRINTSPR003671.3E-92435IPR001471AP2/ERF domain
PRINTSPR003671.3E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDKTQDIEGK KIKRNRDSSK HPDYRGVRMR NWGKWVSEIR EPRKKSRIWL GTFPNPEMAA  60
RAHDVAALSI KGNSAILNFP ELAASLPRPV TLSPRDIQAA AAKAAAMDKF DNNNINITTT  120
SSSSHSSPNN STSSSSNMST SSSLSSLVSA IDLATSEELT QIIELPRLGT SYFDDELKND  180
LVYSDHSAVE GWLYPDDGGM IYSSCFEPSL LWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-181880972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263162.11e-127PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-62DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J6JEB91e-126A0A1J6JEB9_NICAT; Dehydration-responsive element-binding protein 3
STRINGXP_009767580.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]