PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01611g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 530aa    MW: 58526.8 Da    PI: 7.4322
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01611g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-191977357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Niben101Scf01611g00004.1 19 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                              5679*****************************************************97 PP
2START1792.7e-561643722205
                               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEEC CS
                     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevis 86 
                               laee+++e+++ka+ ++  Wv+++ +++g++++ + + s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v s
  Niben101Scf01611g00004.1 164 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGITAISHSCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMS 247
                               7899******************************************************.8888888888**************** PP

                               TT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
                     START  87 sg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                               +g  g+++l +++l+a+++l+p Rdf+  Ry+  +++g++v++++S++++q+ p+    +++vRaellpSg+li+p+++g+s ++
  Niben101Scf01611g00004.1 248 TGsgGTIELLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVVCERSLNNTQNGPSmppVQNFVRAELLPSGYLIRPCEGGGSIIH 332
                               *****************************************************9988899************************* PP

                               EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                     START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                               +v+h+dl+ ++++++lr+l++s+++  ++t++a+l+++++
  Niben101Scf01611g00004.1 333 IVDHMDLEPWSVPEVLRPLYESSTVLSQRTTMAALRHLRQ 372
                               ***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7751478IPR001356Homeobox domain
SMARTSM003891.2E-151682IPR001356Homeobox domain
SuperFamilySSF466893.12E-171880IPR009057Homeodomain-like
CDDcd000861.37E-161979No hitNo description
PfamPF000469.0E-172077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-192177IPR009057Homeodomain-like
CDDcd146864.52E-671110No hitNo description
PROSITE profilePS5084826.27154382IPR002913START domain
CDDcd088753.17E-81158373No hitNo description
SMARTSM002343.0E-39163373IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-23163369IPR023393START-like domain
PfamPF018522.0E-53164372IPR002913START domain
SuperFamilySSF559614.67E-37164374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MMAVTLAYKD SKMGMDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENSFFR  120
QQTQTAALTT TDNNSCESVV TSGQQNLSAQ RPPRDASPAG LLSLAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGITA ISHSCSGVAS RACGLVGLEP TRVAEILKDR PSWFRDCRAV  240
DVLNVMSTGS GGTIELLYMQ LYAPTTLAPA RDFWLMRYTS VMEDGSLVVC ERSLNNTQNG  300
PSMPPVQNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTVLSQ  360
RTTMAALRHL RQISQEISHP TVTGWGRRPA ALRALGQRLS KGFNEAVNSF TDEGWSMLES  420
DGIDDVTLLV NSSSSKLMGA NISYANGFPS MSSAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSIPVTRTGS FGGQIILPLA HTIEHEEASD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781184.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A1U7X2S90.0A0A1U7X2S9_NICSY; homeobox-leucine zipper protein ATHB-15-like
STRINGXP_009781184.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]