PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01524g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 26471.5 Da PI: 4.7767 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 28 | 78 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+ + ++ +++ +LA+ lgL+ rqV +WFqN+Ra++k Niben101Scf01524g00017.1 28 RFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 78 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.6 | 1.4e-37 | 26 | 115 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +r+++eqvklLE++F+ e+kLep++K +lar+Lglqprqva+WFqn+RAR+ktkqlE++y +Lk+++d+l+ + ++L++e+e+L Niben101Scf01524g00017.1 26 GKRFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKTKQLENEYIVLKAKFDHLNMQFQSLKTEKERL 110 58*********************************************************************************** PP HD-ZIP_I/II 88 reelk 92 +l+ Niben101Scf01524g00017.1 111 LIQLE 115 98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.49E-18 | 15 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-15 | 22 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-19 | 27 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.2E-16 | 28 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.69E-13 | 28 | 81 | No hit | No description |
PRINTS | PR00031 | 1.6E-5 | 51 | 60 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 55 | 78 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-5 | 60 | 76 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.8E-11 | 80 | 121 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEPEESQELK ISKSSNSLKK KSSENGKRFT DEQVKLLESM FRLETKLEPR KKLQLARDLG 60 LQPRQVAIWF QNKRARWKTK QLENEYIVLK AKFDHLNMQF QSLKTEKERL LIQLELLNDQ 120 LENNVARGSR SEDLKDNELY TSSENGGTEL ELKDSPGCSN ARIDHKRIKE DQDDDTAEET 180 DKYFTPKEEA EFWNLEELGD NSLEQWCVGL GSSFNQSCNK SELWDF |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232295.1 | 1e-152 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | A0A1J6KHK4 | 1e-150 | A0A1J6KHK4_NICAT; Homeobox-leucine zipper protein athb-7 | ||||
STRING | XP_009798092.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 1e-35 | homeobox 7 |