PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01512g01001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 296aa MW: 32608.8 Da PI: 10.3616

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01512g01001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.9e-14	119	163	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Niben101Scf01512g01001.1 119 PWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 163 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.941	112	168	IPR017930	Myb domain
SuperFamily	SSF46689	6.43E-18	114	169	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-18	115	167	IPR006447	Myb domain, plants
SMART	SM00717	3.5E-11	116	166	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-11	116	162	IPR009057	Homeodomain-like
CDD	cd00167	9.17E-10	119	164	No hit	No description
Pfam	PF00249	1.1E-11	119	163	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGRKCSHCGI TGHNSRTCKP QKTKIDENNE DATSNIGMKL FGVKLEIPKA SSFASSVSIK 60 KSFSVGCISN SSKISSSTVG SFASNGKMFS DENLDCKGSN GYLSDELVGR TSDKKKGVPW 120 TEEEHRIFLV GLEKLGKGDW RGISRNFVTT RTPTQVASHA QKYFLRQNSL NRTKRRRSLF 180 DKVGMDKSTI LLFDKRVTKA KESTSISYEK SPQHGETNIS MINFSTSSSK DSKSNSQQYS 240 MPGTFVNLPF INSSDYISIQ DSQKPDLELT LAAPRQLNNQ SRKSSGLLAG NTITVV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780709.1	0.0	PREDICTED: myb-like protein H isoform X1
Refseq	XP_016450793.1	0.0	PREDICTED: myb-like protein H isoform X1
Swissprot	Q7XC57	5e-52	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A1S3YFJ3	0.0	A0A1S3YFJ3_TOBAC; myb-like protein H isoform X1
TrEMBL	A0A1U7X1F4	0.0	A0A1U7X1F4_NICSY; myb-like protein H isoform X1
STRING	XP_009780709.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3385	21	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	3e-48	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]