PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01511g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 668aa    MW: 73586.3 Da    PI: 7.93
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01511g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.24.9e-25212262152
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                               k+r++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQ 
  Niben101Scf01511g00019.1 212 KARVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVDGLTRENVASHLQA 262
                               68*******************.*****************************4 PP
2Response_reg79.41.3e-26301381109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ 
  Niben101Scf01511g00019.1  30 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARMALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDT 112
                               799********************.***************999889*******************87754.558************ PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               +++ + ++ Ga d+l+Kp+  eel++
  Niben101Scf01511g00019.1 113 KLVMKGISHGACDYLVKPVRLEELRN 138
                               ***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.1E-1576652IPR017053Response regulator B-type, plant
SuperFamilySSF521724.98E-3627156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-4327161No hitNo description
SMARTSM004484.1E-3228140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.429144IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-2430138IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.33E-2831144No hitNo description
Gene3DG3DSA:1.10.10.605.8E-26209276IPR009057Homeodomain-like
PROSITE profilePS5129412.222209268IPR017930Myb domain
SuperFamilySSF466891.22E-15210268IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-21212263IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MTVEEIRGNN KGGERENYQN YDNFPIGMRV LAVDDDPICL KLLDGLLRKC QYHVTTTSQA  60
RMALKMLREN RDRFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANS DTKLVMKGIS  120
HGACDYLVKP VRLEELRNVW QHVIRRKKVE PKSRSKSNDH EKSYPGSGEG GRGQSPTGNA  180
DQNGKLNKKR KDEEDETDEN GSDNEDTANQ KKARVVWSIE LHRKFVAAVN QLGIEKAVPK  240
RILDLMNVDG LTRENVASHL QALVLLLKYR LYLKRISSVA AQQANMVAAL GGKDYMRMGS  300
LDGLGDFRTL ARSGRYSHPT LSSYTSGGML GRLNSAAGLS VRNLAAPQLL QPSHGQSLNN  360
SVNAFAKLNP NILPASQSAS LFHGIPASLE LDQLQQNKSS VHIPLDESRL LTTDVLGCTN  420
NSLSNVSNNP MILQGNSINM APFSSDSFNT SVNGSSNFLD QGRCNENWQN SVQLSKFQSS  480
SFPLTEAFLN SHLPQSSVRD DNSSAAPPHL QNSSLDFAST TTVSPSFEDS RGKIQFRDGT  540
AGAVQSMNQA SSQAWADNKQ RYSNNSNNTF GNLSSQVPNN GGNMASLSHS IHQSNENFGR  600
RMDMSLIGRS NGCSSALIQH AENEKLTPDS RTRSTEDYLL EPTKQQVGFS PQGYDSLDDL  660
MSAMKRRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-22210277364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230468.10.0PREDICTED: two-component response regulator ARR12-like
SwissprotB8AEH11e-136ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A314KJ640.0A0A314KJ64_NICAT; Two-component response regulator
STRINGXP_009795713.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-117response regulator 12