PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01495g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 27884.3 Da PI: 7.6457 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +vk++G ++W+ a+ g++Rt+k+c++rw +yl Niben101Scf01495g01001.1 9 KGPWTEQEDVQLVFYVKMFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 5.8e-18 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T++E+ l ++++ ++G++ W++Ia +++ gRt++++k++w++++ Niben101Scf01495g01001.1 62 RGRMTPQEEHLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 107 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.908 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-29 | 8 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-8 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 26.153 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 62 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.44E-10 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 64 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVQEEIIRKG PWTEQEDVQL VFYVKMFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPTL 60 KRGRMTPQEE HLVLQLHSKY GNRWSKIAGK LPGRTDNEIK NYWRTHMREQ AQDQRNKNKA 120 SISPSSSFSN SSSNSSANSP TVDSMPINEQ YERNSKEGLE HLKLAAGENK VYDYEAGEKN 180 MMVYSIDEIW KDVESSKDID QTMNKLPIMA SPLWDYWPDS LWMTDYYIDN QDISFFTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-28 | 9 | 111 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-27 | 9 | 111 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-27 | 9 | 111 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 5e-28 | 7 | 111 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-28 | 9 | 111 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-28 | 9 | 111 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798979.1 | 1e-150 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 1e-69 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A1U7YIA7 | 1e-149 | A0A1U7YIA7_NICSY; transcription factor MYB48-like | ||||
STRING | XP_009798979.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 1e-69 | myb domain protein 48 |
Publications ? help Back to Top | |||
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