PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01490g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 725aa MW: 79038.2 Da PI: 6.6215

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01490g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	510	547	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Niben101Scf01490g00001.1 510 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 547 554459******************************88 PP
2	BELL	93.2	2.5e-30	388	442	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Niben101Scf01490g00001.1 388 KVDRRYNHYCEQMQMVVNSFDLVMGFGAAIPYTALAQKAMSRHFRCLKDAITAQL 442 7***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-62	306	440	IPR006563	POX domain
Pfam	PF07526	8.4E-41	311	439	IPR006563	POX domain
PROSITE profile	PS50071	12.6	488	551	IPR001356	Homeobox domain
CDD	cd00086	2.59E-12	491	552	No hit	No description
SMART	SM00389	1.0E-9	491	555	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	493	558	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	494	557	IPR009057	Homeodomain-like
Pfam	PF05920	3.6E-18	508	547	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MSQDYHHQSL FSFPNGFERS QAEQQQQQQQ QHMAQQIRRD KLRVQGFEPQ QFEEEASGLP 60 VYDQTAGMLS EMFSFPPGTS STELLESQFN PNFRHPNPNQ RSQPQQIPPP AGMENAWFGN 120 RQGMVVPLGY AKNHNNQISS AGINAAESMQ LFLMNPQPRS PSPSPSHPPP PPPSTNSSTL 180 HMLLPNPSST STLEGFPNPA EGSFGQFTWG NNGGASATLN TPNEIGAGVN HVVESQGLSL 240 SLSSSLQHKA EELRMGEESG MLFFNQGGGG STTSGQFRYK NLNIGNSGIV GQNLHQQVHA 300 GYGSSLGVVN VLRNSRYAKA AEELLEEFCS VGRGKFKKNN KATAVNPYSN NPSGGANGGG 360 GNNNTSSSSS KDLPPLSAAD RIEHQRRKVD RRYNHYCEQM QMVVNSFDLV MGFGAAIPYT 420 ALAQKAMSRH FRCLKDAITA QLKHSCELLG DKDAGTSGLT KGETPRLKML EQSLRQQRAF 480 HQMGMMEQEA WRPQRGLPER SVNVLRAWLF EHFLHPYPSD ADKHLLARQT GLSRNQVSNW 540 FINARVRLWK PMVEEMYQQE AKEEEDEDDE RENSQNQNSG NNAQTPTPNM SNSSSTNMTT 600 TTTALGAAAA AAETGTAATA TTATAASTLG KRSEINAPEN DPSLVAINSH ISFSENQATF 660 PTNIHDSDVA ACRRGGNFAG DDYGTTTNSD VGSTMIRFGT TAGDVSLTLG LRHAGNLPEN 720 THFFG

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MSQDYHHQSL FSFPNGFERS QAEQQQQQQQ QHMAQQIRRD KLRVQGFEPQ QFEEEASGLP  60
VYDQTAGMLS EMFSFPPGTS STELLESQFN PNFRHPNPNQ RSQPQQIPPP AGMENAWFGN  120
RQGMVVPLGY AKNHNNQISS AGINAAESMQ LFLMNPQPRS PSPSPSHPPP PPPSTNSSTL  180
HMLLPNPSST STLEGFPNPA EGSFGQFTWG NNGGASATLN TPNEIGAGVN HVVESQGLSL  240
SLSSSLQHKA EELRMGEESG MLFFNQGGGG STTSGQFRYK NLNIGNSGIV GQNLHQQVHA  300
GYGSSLGVVN VLRNSRYAKA AEELLEEFCS VGRGKFKKNN KATAVNPYSN NPSGGANGGG  360
GNNNTSSSSS KDLPPLSAAD RIEHQRRKVD RRYNHYCEQM QMVVNSFDLV MGFGAAIPYT  420
ALAQKAMSRH FRCLKDAITA QLKHSCELLG DKDAGTSGLT KGETPRLKML EQSLRQQRAF  480
HQMGMMEQEA WRPQRGLPER SVNVLRAWLF EHFLHPYPSD ADKHLLARQT GLSRNQVSNW  540
FINARVRLWK PMVEEMYQQE AKEEEDEDDE RENSQNQNSG NNAQTPTPNM SNSSSTNMTT  600
TTTALGAAAA AAETGTAATA TTATAASTLG KRSEINAPEN DPSLVAINSH ISFSENQATF  660
PTNIHDSDVA ACRRGGNFAG DDYGTTTNSD VGSTMIRFGT TAGDVSLTLG LRHAGNLPEN  720
THFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	497	555	5	63	Homeobox protein Meis2
3k2a_B	3e-16	497	555	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776283.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-160	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U7WCA3	0.0	A0A1U7WCA3_NICSY; BEL1-like homeodomain protein 2
STRING	XP_009776283.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-138	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]