PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01453g11005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 433aa    MW: 47304.8 Da    PI: 6.4317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01453g11005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20203252255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Niben101Scf01453g11005.1 203 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 252
                               8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-21202262No hitNo description
SuperFamilySSF541711.18E-22203261IPR016177DNA-binding domain
PfamPF008473.5E-14203252IPR001471AP2/ERF domain
PROSITE profilePS5103225.712203260IPR001471AP2/ERF domain
SMARTSM003807.0E-37203266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-33203261IPR001471AP2/ERF domain
PRINTSPR003671.2E-11204215IPR001471AP2/ERF domain
PRINTSPR003671.2E-11226242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MALVSALSVA NPGESGEHDR IPSTGGDSES TTTTTEGGIP QPYEQSFEEM LRQQIQQETD  60
YLMSSSAAPM FSGYSQTREM SAMVTALTHV VSGRRQGELT NRPEITTSFG GGSPSSSSSG  120
SWAGQKRRRD QEESVAAEQV QRVYGGFGEF RGGESSSSVK PEEASRMVAP PTTTSTITMT  180
AAAQPTPQPA EGGAEETGER RKRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDTAEAAA  240
RAYDEAALRF RGNRAKLNFP ENVRILPPQQ QQPPQPTTRL AISSSSAASQ FPLMAAATTP  300
SHFFQTYHPQ QQQQQPPFQN SEMVRDYWEY SQLLQNPDDF HAQQSSSSLL EQMLLASSSM  360
GLLHSYTFPS CSSSSLATSS SASSPAYPLF YSAQQSRFFQ PPQTSHQNQT SSSTSSFPAP  420
FWTSSTHYPP SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22202263163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483059.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1S4B2I50.0A0A1S4B2I5_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_009777816.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-22ethylene response factor 110